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| GenBank Identifier | RefSeq Acc. | Name |
| 22788711 | NC_004156.1 | Heliothis zea virus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 16690 | - | 164005 | 90 | 24 | -31.5 | NP_690528 | 5' arm 3' arm | ||
| 16669 | - | 58885 | 87 | 26.5 | -30.7 | NP_690462 | 5' arm 3' arm | ||
| 16665 | - | 44807 | 85 | 22.5 | -30.1 | NP_690455 | 5' arm 3' arm | ||
| 16653 | + | 170034 | 90 | 21 | -30 | NP_690534 | 5' arm 3' arm | ||
| 16660 | + | 222971 | 88 | 25.5 | -28.94 | NP_690573 | 5' arm 3' arm | ||
| 16699 | - | 207372 | 86 | 25.5 | -28.7 | NP_690559 | 5' arm 3' arm | ||
| 16663 | - | 25453 | 86 | 20.5 | -28.5 | NP_690438 | 5' arm 3' arm | ||
| 16693 | - | 174466 | 89 | 21 | -28 | NP_690538 | 5' arm 3' arm | ||
| 16668 | - | 57896 | 88 | 21 | -27.6 | NP_690460 | 5' arm 3' arm | ||
| 16666 | - | 53470 | 90 | 26 | -27.4 | NP_690456 | 5' arm 3' arm | ||
| 16649 | + | 122878 | 85 | 29.5 | -27.3 | NP_690502 | 5' arm 3' arm | ||
| 16686 | - | 144350 | 89 | 21.5 | -26.9 | 5' arm 3' arm | |||
| 16652 | + | 146304 | 89 | 23 | -26.3 | NP_690519 | 5' arm 3' arm | ||
| 16687 | - | 144766 | 90 | 25 | -26.1 | 5' arm 3' arm | |||
| 16657 | + | 207380 | 86 | 19.5 | -25.9 | NP_690559 | 5' arm 3' arm | ||
| 16684 | - | 135420 | 90 | 25.5 | -25.8 | NP_690514 | 5' arm 3' arm | ||
| 16700 | - | 211467 | 89 | 21.5 | -25.5 | NP_690563 | 5' arm 3' arm | ||
| 16629 | + | 39304 | 89 | 22.5 | -25.4 | NP_690450 | 5' arm 3' arm | ||
| 16633 | + | 56814 | 82 | 21 | -25.4 | 5' arm 3' arm | |||
| 16650 | + | 123043 | 89 | 24 | -24.7 | NP_690502 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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