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GenBank Identifier | RefSeq Acc. | Name |
9635581 | NC_002484.1 | Pseudomonas phage D3 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
8788 | + | 427 | 78 | 20.5 | -22.1 | NP_061498 | 5' arm 3' arm | ||
8789 | + | 799 | 90 | 22 | -21.4 | NP_061498 | 5' arm 3' arm | ||
8790 | + | 1128 | 89 | 21.5 | -21.3 | NP_061498 | 5' arm 3' arm | ||
8791 | + | 1438 | 87 | 19 | -21.9 | NP_061498 | 5' arm 3' arm | ||
8792 | + | 2185 | 90 | 22 | -19.4 | NP_061499 | 5' arm 3' arm | ||
8793 | + | 2442 | 90 | 21.5 | -20.3 | NP_061500 | 5' arm 3' arm | ||
8794 | + | 2557 | 86 | 21 | -21.5 | NP_061500 | 5' arm 3' arm | ||
8795 | + | 3055 | 89 | 24 | -20.6 | NP_061500 | 5' arm 3' arm | ||
8796 | + | 3599 | 89 | 22.5 | -33.9 | NP_061501 | 5' arm 3' arm | ||
8797 | + | 3744 | 90 | 19 | -22.8 | NP_061501 | 5' arm 3' arm | ||
8798 | + | 6004 | 87 | 23.5 | -23 | NP_061504 | 5' arm 3' arm | ||
8799 | + | 6546 | 87 | 21.5 | -22.7 | NP_061505 | 5' arm 3' arm | ||
8800 | + | 6666 | 88 | 19.5 | -19.4 | 5' arm 3' arm | |||
8801 | + | 6793 | 90 | 20 | -21.6 | NP_061506 | 5' arm 3' arm | ||
8802 | + | 7095 | 87 | 20 | -19.8 | 5' arm 3' arm | |||
8803 | + | 7362 | 88 | 22 | -27.4 | NP_061507 | 5' arm 3' arm | ||
8804 | + | 8267 | 84 | 20.5 | -22.5 | NP_061508 | 5' arm 3' arm | ||
8805 | + | 9180 | 90 | 20.5 | -19.4 | NP_061510 | 5' arm 3' arm | ||
8806 | + | 10962 | 79 | 20 | -21 | NP_061514 | 5' arm 3' arm | ||
8807 | + | 11235 | 90 | 21.5 | -23 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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