miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
32314	+	22712	90	22.5	-21.09	YP_239292		5' arm      3' arm
32315	+	22886	90	20	-20.7	YP_239292		5' arm      3' arm
32346	-	22194	89	19	-20.7	YP_239292		5' arm      3' arm
32312	+	21895	87	21	-22.5	YP_239292		5' arm      3' arm
32347	-	25619	88	20.5	-19.41	YP_239297		5' arm      3' arm
32316	+	25530	90	22.5	-25.6	YP_239297		5' arm      3' arm
32317	+	26543	89	22	-19.9	YP_239298		5' arm      3' arm
32318	+	27914	88	23	-25.6	YP_239300		5' arm      3' arm
32349	-	28921	90	22.5	-24.6	YP_239301		5' arm      3' arm
32319	+	30925	79	23.5	-25.7	YP_239305		5' arm      3' arm
32320	+	33405	90	19.5	-30.1	YP_239307		5' arm      3' arm
32321	+	33927	86	22.5	-26.5	YP_239308		5' arm      3' arm
32322	+	34244	89	19.5	-21	YP_239308		5' arm      3' arm
32352	-	35586	89	23.5	-23.9	YP_239310
32353	-	40176	86	22.5	-29.1	YP_239314		5' arm      3' arm
32354	-	40728	87	22	-32.6	YP_239315		5' arm      3' arm
32325	+	40375	90	23	-21.5	YP_239315		5' arm      3' arm
32326	+	42621	90	22.5	-22.4	YP_239316		5' arm      3' arm
32327	+	43035	90	20	-25.9	YP_239316		5' arm      3' arm
32356	-	43680	88	21.5	-20.7	YP_239317		3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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