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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23687 | + | 119923 | 90 | 23 | -28.8 | NP_954958 | 5' arm 3' arm | ||
| 23853 | - | 128030 | 86 | 23 | -28 | NP_954963 | 5' arm 3' arm | ||
| 23613 | + | 55421 | 90 | 22.5 | -28.5 | NP_954919 | 5' arm 3' arm | ||
| 23840 | - | 119566 | 89 | 22.5 | -24.7 | 5' arm 3' arm | |||
| 23815 | - | 96382 | 90 | 22.5 | -34.7 | NP_954943 | 5' arm 3' arm | ||
| 23686 | + | 119588 | 90 | 22.5 | -25.5 | NP_954958 | 5' arm 3' arm | ||
| 23837 | - | 118318 | 89 | 22.5 | -26.8 | NP_954957 | 5' arm 3' arm | ||
| 23646 | + | 83991 | 90 | 22.5 | -24.2 | NP_954935 | 5' arm 3' arm | ||
| 23676 | + | 113215 | 86 | 22.5 | -22.1 | 5' arm 3' arm | |||
| 23612 | + | 54243 | 88 | 22.5 | -23.7 | 5' arm 3' arm | |||
| 23611 | + | 53704 | 90 | 22.5 | -34 | NP_954918 | 5' arm 3' arm | ||
| 23566 | + | 14616 | 90 | 22.5 | -19.4 | NP_954901 | 5' arm 3' arm | ||
| 23703 | + | 134334 | 90 | 22.5 | -21.8 | NP_954964 | 5' arm 3' arm | ||
| 23820 | - | 98582 | 90 | 22.5 | -32.5 | NP_954944 | 5' arm 3' arm | ||
| 23774 | - | 66830 | 89 | 22.5 | -22.4 | NP_954926 | 5' arm 3' arm | ||
| 23695 | + | 126764 | 90 | 22.5 | -24.4 | 5' arm 3' arm | |||
| 23800 | - | 84844 | 89 | 22.5 | -26.8 | NP_954936 | 5' arm 3' arm | ||
| 23691 | + | 123791 | 90 | 22.5 | -26 | 5' arm 3' arm | |||
| 23559 | + | 6188 | 89 | 22.5 | -31.3 | NP_954895 | 5' arm 3' arm | ||
| 23783 | - | 72864 | 90 | 22.5 | -21.3 | NP_954929 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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