miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
13379	-	33800	90	24	-19.7	NP_572071		5' arm      3' arm
13358	+	134778	89	23.5	-25.2			5' arm      3' arm
13364	-	14105	87	23.5	-22.5	NP_572057		5' arm      3' arm
13311	+	63687	89	23	-25.3	NP_572096		5' arm      3' arm
13440	-	111135	89	23	-33	NP_572120		5' arm      3' arm
13305	+	52696	89	23	-25.3	NP_572084		5' arm      3' arm
13350	+	130888	90	23	-20.8	NP_572132		5' arm      3' arm
13407	-	84272	89	23	-21.7	NP_572111		5' arm      3' arm
13326	+	87685	90	23	-25.7	NP_572112		5' arm      3' arm
13332	+	107598	89	23	-21.1	NP_572120		5' arm      3' arm
13426	-	102899	90	23	-20.3	NP_572119		5' arm      3' arm
13282	+	30964	88	23	-25.7	NP_572069		5' arm      3' arm
13346	+	127110	89	23	-22.7	NP_572129		5' arm      3' arm
13289	+	33629	87	23	-28	NP_572071		5' arm      3' arm
13461	-	121926	88	23	-22.7		kshv-mir-K12-1	5' arm
13324	+	86177	89	23	-25.4	NP_572112		5' arm      3' arm
13400	-	75396	88	23	-26.16	NP_572104		5' arm      3' arm
13441	-	111343	90	23	-23	NP_572120		5' arm      3' arm
13341	+	121254	88	23	-20.4			5' arm      3' arm
13465	-	133096	89	23	-21.8	NP_572132		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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