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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28931 | + | 166977 | 87 | 26 | -21.3 | 5' arm 3' arm | |||
| 29091 | - | 120917 | 89 | 26 | -31.4 | YP_067995 | 5' arm 3' arm | ||
| 29151 | - | 164759 | 90 | 25.5 | -19.8 | YP_068017 | 5' arm 3' arm | ||
| 28787 | + | 50799 | 90 | 25.5 | -31 | YP_067950 | 5' arm 3' arm | ||
| 28868 | + | 134008 | 89 | 25.5 | -27.4 | rlcv-mir-rL1-8 | 5' arm | ||
| 29045 | - | 84576 | 90 | 25.5 | -21.4 | 5' arm 3' arm | |||
| 29048 | - | 87320 | 89 | 25 | -27.2 | YP_067971 | 5' arm 3' arm | ||
| 29060 | - | 96533 | 86 | 25 | -27 | YP_067978 | 5' arm 3' arm | ||
| 29110 | - | 133946 | 89 | 25 | -19.9 | 5' arm 3' arm | |||
| 28870 | + | 134290 | 89 | 25 | -29.1 | rlcv-mir-rL1-9 | 3' arm | ||
| 29043 | - | 82475 | 89 | 25 | -21.9 | YP_067967 | 5' arm 3' arm | ||
| 28874 | + | 138376 | 88 | 25 | -25.1 | 5' arm 3' arm | |||
| 28865 | + | 133546 | 87 | 25 | -25 | rlcv-mir-rL1-5 | 5' arm 3' arm | ||
| 28816 | + | 75093 | 90 | 25 | -26.2 | YP_067965 | 5' arm 3' arm | ||
| 28891 | + | 143266 | 84 | 24.5 | -27.4 | rlcv-mir-rL1-15 | 3' arm | ||
| 28747 | + | 20292 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
| 28753 | + | 26454 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
| 28744 | + | 17211 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
| 29122 | - | 143643 | 90 | 24.5 | -25.72 | 5' arm 3' arm | |||
| 28750 | + | 23373 | 90 | 24.5 | -25.1 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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