miRNA display CGI


Results 1 - 20 of 119 are showing below:
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GenBank Identifier RefSeq Acc. Name
58042841 NC_005137.2 Choristoneura fumiferana defective nucleopolyhedrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
22951 - 82231 89 28 -23.1 NP_932705 5' arm      3' arm
22932 - 35489 89 27.5 -22.12 NP_932654 5' arm      3' arm
22880 + 60896 90 25.5 -29.4 NP_932682 5' arm      3' arm
22898 + 96517 89 25.5 -30.5 NP_932723 5' arm      3' arm
22901 + 99374 90 24.5 -19.4 NP_932728 5' arm      3' arm
22912 + 122824 89 24.5 -23.9 NP_932750 5' arm      3' arm
22871 + 33756 88 24 -19.7 NP_932652 5' arm      3' arm
22915 - 1189 90 24 -20.5 NP_932611 5' arm      3' arm
22959 - 106851 89 24 -25.3 NP_932735 5' arm      3' arm
22966 - 116448 89 24 -21.5 NP_932743 5' arm      3' arm
22972 - 130823 90 24 -24.2 NP_932609 5' arm      3' arm
22908 + 111997 81 24 -26 NP_932741 5' arm      3' arm
22862 + 17455 89 23.5 -23.5 NP_932630 5' arm      3' arm
22940 - 56628 90 23 -30.1 NP_932674 5' arm      3' arm
22923 - 24378 89 23 -21.6 NP_932640 5' arm      3' arm
22936 - 46206 89 23 -25 NP_932667 5' arm      3' arm
22958 - 106682 90 23 -21.4 NP_932735 5' arm      3' arm
22945 - 70127 90 23 -19.8 NP_932693 5' arm      3' arm
22969 - 119889 89 23 -25.6 NP_932748 5' arm      3' arm
22892 + 85541 90 22.5 -24.6 NP_932708 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.