miRNA display CGI


Results 1 - 20 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 197315 0.66 0.951063
Target:  5'- gCCGCGCGgCGGCUgcUgCCCg -3'
miRNA:   3'- -GGCGCGCgGUCGGguAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 115933 0.66 0.951063
Target:  5'- -aGCGCGUCAGCa-GUCCgCCg -3'
miRNA:   3'- ggCGCGCGGUCGggUAGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233471 0.66 0.951063
Target:  5'- aCCGCgcccaGCGCCAGCCag-CCgCa -3'
miRNA:   3'- -GGCG-----CGCGGUCGGguaGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 233224 0.66 0.951063
Target:  5'- gCCGCGCGgCGGCUgcUgCCCg -3'
miRNA:   3'- -GGCGCGCgGUCGGguAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 47502 0.66 0.951063
Target:  5'- gCCGCGCGaggcCCAGCUCgAUCUCg -3'
miRNA:   3'- -GGCGCGC----GGUCGGG-UAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 194488 0.66 0.951063
Target:  5'- aCCG-GCGCCGgcGCCCAgcacgCCCg -3'
miRNA:   3'- -GGCgCGCGGU--CGGGUa----GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 1220 0.66 0.951063
Target:  5'- aCCG-GCGCCGgcGCCCAgcacgCCCg -3'
miRNA:   3'- -GGCgCGCGGU--CGGGUa----GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 103777 0.66 0.951063
Target:  5'- aCCGCGCGCguGCCaggCCg- -3'
miRNA:   3'- -GGCGCGCGguCGGguaGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 34102 0.66 0.951063
Target:  5'- aCCGcCGuCGUCGcGCCCGUCgCCg -3'
miRNA:   3'- -GGC-GC-GCGGU-CGGGUAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 41864 0.66 0.951063
Target:  5'- aCCGagacgaGCGCCAaaccGCCCGUCaCCa -3'
miRNA:   3'- -GGCg-----CGCGGU----CGGGUAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 154237 0.66 0.951063
Target:  5'- uUCGUGCGgccgcCCAGCuCCAUCCgCa -3'
miRNA:   3'- -GGCGCGC-----GGUCG-GGUAGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197068 0.66 0.951063
Target:  5'- aCCGCgcccaGCGCCAGCCag-CCgCa -3'
miRNA:   3'- -GGCG-----CGCGGUCGGguaGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 103722 0.66 0.948444
Target:  5'- -gGCGCGCCAGCUCGaacgcaucaacacgcUUUCCg -3'
miRNA:   3'- ggCGCGCGGUCGGGU---------------AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233008 0.66 0.946647
Target:  5'- cUCGCGCcCCAGCgCCAgcgCgCCCa -3'
miRNA:   3'- -GGCGCGcGGUCG-GGUa--G-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 33679 0.66 0.946647
Target:  5'- gUCGCGCGCC-GCCgAcgCCCg -3'
miRNA:   3'- -GGCGCGCGGuCGGgUa-GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 144167 0.66 0.946647
Target:  5'- cUCGCGCGCCGagaucGCCgAggCCCUg -3'
miRNA:   3'- -GGCGCGCGGU-----CGGgUa-GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 187426 0.66 0.946647
Target:  5'- cCCGCGCGgCGGUCUguuAUCCgCg -3'
miRNA:   3'- -GGCGCGCgGUCGGG---UAGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 191541 0.66 0.946647
Target:  5'- cCCGUGCuuaCAGCCU-UCCCCu -3'
miRNA:   3'- -GGCGCGcg-GUCGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 57860 0.66 0.946647
Target:  5'- gCCGCGCcgaGCCAGCggGcCCCCg -3'
miRNA:   3'- -GGCGCG---CGGUCGggUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 174140 0.66 0.946647
Target:  5'- -aGCgGUGCaAGCCCAUuCCCCg -3'
miRNA:   3'- ggCG-CGCGgUCGGGUA-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.