miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10284 3' -52.3 NC_002687.1 + 201272 0.66 0.999321
Target:  5'- aGAGuCCGCgccCGCAuUGCGAGAcaCACa -3'
miRNA:   3'- gCUCuGGCG---GCGU-AUGCUCUuaGUGg -5'
10284 3' -52.3 NC_002687.1 + 30240 0.66 0.999321
Target:  5'- uCGAGGCCGUCGUuguugGCGuG-GUCAUg -3'
miRNA:   3'- -GCUCUGGCGGCGua---UGCuCuUAGUGg -5'
10284 3' -52.3 NC_002687.1 + 243568 0.66 0.999177
Target:  5'- uGAGGCCGCCuuCAuuUACGAcaccGAUCACa -3'
miRNA:   3'- gCUCUGGCGGc-GU--AUGCUc---UUAGUGg -5'
10284 3' -52.3 NC_002687.1 + 210677 0.66 0.999177
Target:  5'- aGAGGCCgGCCaCGUACGuuccacAGUCACUc -3'
miRNA:   3'- gCUCUGG-CGGcGUAUGCuc----UUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 298012 0.66 0.999177
Target:  5'- gCGAGGCgGCCGCuuucGUGCcaaAGAAcaagCGCCc -3'
miRNA:   3'- -GCUCUGgCGGCG----UAUGc--UCUUa---GUGG- -5'
10284 3' -52.3 NC_002687.1 + 305123 0.66 0.999177
Target:  5'- gGAGAgCCGCCGCGUugaacAUGAG----GCCu -3'
miRNA:   3'- gCUCU-GGCGGCGUA-----UGCUCuuagUGG- -5'
10284 3' -52.3 NC_002687.1 + 144266 0.66 0.999177
Target:  5'- -aAGAUUGCCGUGUuucGCGGGggUacuUACCg -3'
miRNA:   3'- gcUCUGGCGGCGUA---UGCUCuuA---GUGG- -5'
10284 3' -52.3 NC_002687.1 + 298089 0.66 0.999129
Target:  5'- cCGGGGuguUCGCCGUGUugGGGGAaacacagucuucguUUGCCg -3'
miRNA:   3'- -GCUCU---GGCGGCGUAugCUCUU--------------AGUGG- -5'
10284 3' -52.3 NC_002687.1 + 292729 0.66 0.999007
Target:  5'- uGAcGGCUGuuGCGUGCGAuAcgCAUCg -3'
miRNA:   3'- gCU-CUGGCggCGUAUGCUcUuaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 71765 0.66 0.999007
Target:  5'- gGAGuacuugaCGCCGUAUGCGGugg-CACCg -3'
miRNA:   3'- gCUCug-----GCGGCGUAUGCUcuuaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 87546 0.66 0.999007
Target:  5'- -uGGugCGcCCGaCGUugugGCGGGggUUACCg -3'
miRNA:   3'- gcUCugGC-GGC-GUA----UGCUCuuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 290278 0.66 0.999007
Target:  5'- --cGACCGCCaagaGCAUGCcuGAGGAgacgacggucacUCGCCc -3'
miRNA:   3'- gcuCUGGCGG----CGUAUG--CUCUU------------AGUGG- -5'
10284 3' -52.3 NC_002687.1 + 97118 0.66 0.999007
Target:  5'- aGaAGACCGCUGUGUcACGGuccuGuAGUCACCc -3'
miRNA:   3'- gC-UCUGGCGGCGUA-UGCU----C-UUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 72842 0.66 0.999007
Target:  5'- uGAGAUCGUcccugCGCAUaucuGCGAGAcUC-CCg -3'
miRNA:   3'- gCUCUGGCG-----GCGUA----UGCUCUuAGuGG- -5'
10284 3' -52.3 NC_002687.1 + 88194 0.66 0.999007
Target:  5'- uCGGGGCUGCCGCA-AUGG---UCACa -3'
miRNA:   3'- -GCUCUGGCGGCGUaUGCUcuuAGUGg -5'
10284 3' -52.3 NC_002687.1 + 234309 0.66 0.999007
Target:  5'- uCGAGGCUGCCGCcgcccuUGAGAAg-GCg -3'
miRNA:   3'- -GCUCUGGCGGCGuau---GCUCUUagUGg -5'
10284 3' -52.3 NC_002687.1 + 295362 0.66 0.998989
Target:  5'- uGAuACCGguggcCCGCGUuucuggaGCGAGuAUCACCa -3'
miRNA:   3'- gCUcUGGC-----GGCGUA-------UGCUCuUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 138722 0.66 0.998808
Target:  5'- aCGAGcCCGCUGU--GCGAGAAUgGg- -3'
miRNA:   3'- -GCUCuGGCGGCGuaUGCUCUUAgUgg -5'
10284 3' -52.3 NC_002687.1 + 260904 0.66 0.998808
Target:  5'- uGAGccgcuGCCGCCGUcaa-GAGggUCcCCa -3'
miRNA:   3'- gCUC-----UGGCGGCGuaugCUCuuAGuGG- -5'
10284 3' -52.3 NC_002687.1 + 66617 0.66 0.998808
Target:  5'- uGAGACCGCCaugGCcccccuGUACGAcGGUUugGCCa -3'
miRNA:   3'- gCUCUGGCGG---CG------UAUGCUcUUAG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.