miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10315 3' -56.1 NC_002687.1 + 81678 0.65 0.98361
Target:  5'- -aGCCGa-AAGGUCUUgcacgucuugacuaGCGCCACCa- -3'
miRNA:   3'- agUGGUggUUCCAGAA--------------CGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 181805 0.65 0.98361
Target:  5'- uUCAUCcCCGcauagguuucgcacGGuGUCUUGUGCgACUGCg -3'
miRNA:   3'- -AGUGGuGGU--------------UC-CAGAACGCGgUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 103833 0.66 0.982327
Target:  5'- cUCugCACCc--GUCUUGaaCGCCugUGCc -3'
miRNA:   3'- -AGugGUGGuucCAGAAC--GCGGugGCG- -5'
10315 3' -56.1 NC_002687.1 + 203451 0.66 0.982327
Target:  5'- gCACCACCuc-GUacc-CGCCGCCGUa -3'
miRNA:   3'- aGUGGUGGuucCAgaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 234782 0.66 0.982327
Target:  5'- cUCGCCuuuucagcuuCUucGGcCUUGUGCUugCGCa -3'
miRNA:   3'- -AGUGGu---------GGuuCCaGAACGCGGugGCG- -5'
10315 3' -56.1 NC_002687.1 + 140727 0.66 0.982327
Target:  5'- -gGCCGCCAAGGaCUUGCuGUUACa-- -3'
miRNA:   3'- agUGGUGGUUCCaGAACG-CGGUGgcg -5'
10315 3' -56.1 NC_002687.1 + 284307 0.66 0.982327
Target:  5'- gCAgCACCAGGGgc-UGCGCCuuCCa- -3'
miRNA:   3'- aGUgGUGGUUCCagaACGCGGu-GGcg -5'
10315 3' -56.1 NC_002687.1 + 88564 0.66 0.980365
Target:  5'- -uGCCGCCGAacucgcGG-CccGCGCCAgCGCg -3'
miRNA:   3'- agUGGUGGUU------CCaGaaCGCGGUgGCG- -5'
10315 3' -56.1 NC_002687.1 + 298892 0.66 0.980365
Target:  5'- gCGCgGCCAAGGaauUCagGCGCCagucgGCCGa -3'
miRNA:   3'- aGUGgUGGUUCC---AGaaCGCGG-----UGGCg -5'
10315 3' -56.1 NC_002687.1 + 182375 0.66 0.980365
Target:  5'- gUCAUCGCCGauAGGUgUUGCGCgUGCUuucgGCu -3'
miRNA:   3'- -AGUGGUGGU--UCCAgAACGCG-GUGG----CG- -5'
10315 3' -56.1 NC_002687.1 + 148091 0.66 0.980365
Target:  5'- uUCAuUCACCAAgccGGUCgUGCGCgC-CCGUa -3'
miRNA:   3'- -AGU-GGUGGUU---CCAGaACGCG-GuGGCG- -5'
10315 3' -56.1 NC_002687.1 + 159954 0.66 0.978245
Target:  5'- -gGCgGCCAAGG-Ca---GCCGCCGCc -3'
miRNA:   3'- agUGgUGGUUCCaGaacgCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 18523 0.66 0.978245
Target:  5'- gCGCCcCCAAGGacagagcUUUGCGUCGCUGg -3'
miRNA:   3'- aGUGGuGGUUCCa------GAACGCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 302180 0.66 0.978245
Target:  5'- uUCAUUGCCGuGGUCg---GUCACCGCu -3'
miRNA:   3'- -AGUGGUGGUuCCAGaacgCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 11544 0.66 0.975961
Target:  5'- uUCGCCACUGAGGUUgcGUGUCaaACCu- -3'
miRNA:   3'- -AGUGGUGGUUCCAGaaCGCGG--UGGcg -5'
10315 3' -56.1 NC_002687.1 + 332889 0.66 0.975961
Target:  5'- aCAagaaCGCCAGGGUg-UGCuGCaGCCGCa -3'
miRNA:   3'- aGUg---GUGGUUCCAgaACG-CGgUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 101937 0.66 0.975961
Target:  5'- gCGCuCGCCGAGuGUCacaUGCGaCAUCGCc -3'
miRNA:   3'- aGUG-GUGGUUC-CAGa--ACGCgGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 295566 0.66 0.975961
Target:  5'- -gGCCGCaaCGGGGUCgUGCggGCauaGCCGCa -3'
miRNA:   3'- agUGGUG--GUUCCAGaACG--CGg--UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 309228 0.66 0.975723
Target:  5'- uUCGCCAUCA-------GCGCCACCGUu -3'
miRNA:   3'- -AGUGGUGGUuccagaaCGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 146447 0.66 0.975723
Target:  5'- aCGCCGCCAauaggguaucgugGGGUCgcgagGCuCCGuuGCu -3'
miRNA:   3'- aGUGGUGGU-------------UCCAGaa---CGcGGUggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.