miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 5' -52.1 NC_003083.1 + 71687 0.66 0.976448
Target:  5'- aUG-GCCGGc-UUGUGUUGaAACACGCa -3'
miRNA:   3'- -ACgCGGCUauAGCGCAACgUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 1618 0.66 0.973783
Target:  5'- aUGUGCCGcacauUAUUgGCGccGUGGCGCGCu -3'
miRNA:   3'- -ACGCGGCu----AUAG-CGCaaCGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 42665 0.66 0.973783
Target:  5'- -aUGCCGuuggcguUCGCGUuaugGCAauuGCACGCc -3'
miRNA:   3'- acGCGGCuau----AGCGCAa---CGU---UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 67133 0.66 0.973783
Target:  5'- cGCGUCGGUAUUuuacaaCGUggGCcaaaAACACGCg -3'
miRNA:   3'- aCGCGGCUAUAGc-----GCAa-CG----UUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 9271 0.66 0.973783
Target:  5'- gUGCGUCag---CGCGUUGCAaAUAUGUg -3'
miRNA:   3'- -ACGCGGcuauaGCGCAACGU-UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 99047 0.66 0.973783
Target:  5'- cGCGCUGcgcuugcuuUUGCuuuugGCAACGCGCa -3'
miRNA:   3'- aCGCGGCuau------AGCGcaa--CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 28516 0.66 0.972943
Target:  5'- aGCGgCGGUGUCGUcugcuaaacacaacGUggccGCGuccGCGCGCg -3'
miRNA:   3'- aCGCgGCUAUAGCG--------------CAa---CGU---UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 38067 0.66 0.970906
Target:  5'- gGUGCCGcggcacGUCGCGUguucuuCAACGCGg -3'
miRNA:   3'- aCGCGGCua----UAGCGCAac----GUUGUGCg -5'
11289 5' -52.1 NC_003083.1 + 109496 0.66 0.970606
Target:  5'- cGCGCaGAcccgugaugUGUCGCGUgcgcuucgcuucUGCGgacuuacGCACGCu -3'
miRNA:   3'- aCGCGgCU---------AUAGCGCA------------ACGU-------UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 29211 0.66 0.967809
Target:  5'- cGCGUCaAUggcAUCGCGUUGUAuuagaugaaGCGCa -3'
miRNA:   3'- aCGCGGcUA---UAGCGCAACGUug-------UGCG- -5'
11289 5' -52.1 NC_003083.1 + 81846 0.66 0.964486
Target:  5'- uUGCgGCCGAUGUugaauauuauucUGCGUgcccggccagUGCcaGAUACGCg -3'
miRNA:   3'- -ACG-CGGCUAUA------------GCGCA----------ACG--UUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 94192 0.66 0.964486
Target:  5'- gGCGCCuucGUCGUGUuugGCGgGCGCGUc -3'
miRNA:   3'- aCGCGGcuaUAGCGCAa--CGU-UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 35673 0.66 0.964486
Target:  5'- gGCGUacacGUCGCG-UGCAAaaaGCGCg -3'
miRNA:   3'- aCGCGgcuaUAGCGCaACGUUg--UGCG- -5'
11289 5' -52.1 NC_003083.1 + 56916 0.66 0.960929
Target:  5'- gGCGCCGAca-CGCucgGCAAagACGCa -3'
miRNA:   3'- aCGCGGCUauaGCGcaaCGUUg-UGCG- -5'
11289 5' -52.1 NC_003083.1 + 28248 0.66 0.960929
Target:  5'- gUGCaGCUGc---CGCGacUUGUAACGCGCg -3'
miRNA:   3'- -ACG-CGGCuauaGCGC--AACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 96706 0.66 0.959816
Target:  5'- gGCGCCGGUcggggaAUCGCGcgaacuuaucgaaucGUuGCACGCc -3'
miRNA:   3'- aCGCGGCUA------UAGCGCaa-------------CGuUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 32315 0.67 0.957134
Target:  5'- aGCGCCGGcagugUGCGUUuCGGCcaGCGCc -3'
miRNA:   3'- aCGCGGCUaua--GCGCAAcGUUG--UGCG- -5'
11289 5' -52.1 NC_003083.1 + 24509 0.67 0.957134
Target:  5'- gGCGCUaAUucGUCGCGUUGacgAAC-CGCa -3'
miRNA:   3'- aCGCGGcUA--UAGCGCAACg--UUGuGCG- -5'
11289 5' -52.1 NC_003083.1 + 112817 0.67 0.957134
Target:  5'- uUGCGaCCGAUAacgCGCGaUUGUuaacAACAaCGCc -3'
miRNA:   3'- -ACGC-GGCUAUa--GCGC-AACG----UUGU-GCG- -5'
11289 5' -52.1 NC_003083.1 + 62937 0.67 0.953094
Target:  5'- aUGUGCCGugcgagCGCGUUGa---ACGCc -3'
miRNA:   3'- -ACGCGGCuaua--GCGCAACguugUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.