miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11314 5' -50.9 NC_003084.1 + 49916 0.66 0.984882
Target:  5'- aCCAccACUGGUGua--CCAACUUGGGUu -3'
miRNA:   3'- cGGU--UGACUACuacgGGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 89312 0.66 0.984694
Target:  5'- aCgAGCUGGUGAUGCgguucacUCAACguaCGAGUc -3'
miRNA:   3'- cGgUUGACUACUACG-------GGUUGa--GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 38763 0.66 0.982923
Target:  5'- cGCUuAGCUGAaGG-GCCCAuuugcgcucCUCGGGCu -3'
miRNA:   3'- -CGG-UUGACUaCUaCGGGUu--------GAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 39979 0.66 0.982923
Target:  5'- gGCgAGCUGGUGGagcUGCaaAACUCGAc- -3'
miRNA:   3'- -CGgUUGACUACU---ACGggUUGAGCUcg -5'
11314 5' -50.9 NC_003084.1 + 73788 0.66 0.982923
Target:  5'- cGCgAGCUGGUGGa--CCAG-UCGGGCg -3'
miRNA:   3'- -CGgUUGACUACUacgGGUUgAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 59038 0.66 0.980779
Target:  5'- uCCGGCgaaGGUGAagguaucgaGCCCAACcCGGGCc -3'
miRNA:   3'- cGGUUGa--CUACUa--------CGGGUUGaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 71832 0.66 0.97844
Target:  5'- cGCCcgaauucaAugUGAUGAaGCCCGAC-CGAuGUc -3'
miRNA:   3'- -CGG--------UugACUACUaCGGGUUGaGCU-CG- -5'
11314 5' -50.9 NC_003084.1 + 58716 0.66 0.97844
Target:  5'- gGUCAACgGAaGGUGCCCAAgUUuaaGGGUa -3'
miRNA:   3'- -CGGUUGaCUaCUACGGGUUgAG---CUCG- -5'
11314 5' -50.9 NC_003084.1 + 43719 0.66 0.975897
Target:  5'- gGUCAAcCUGAUccucGAgugGUCCGAacgcCUCGAGCg -3'
miRNA:   3'- -CGGUU-GACUA----CUa--CGGGUU----GAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 15636 0.66 0.975897
Target:  5'- uCCAACac---GUGCuCCAACUUGAGCu -3'
miRNA:   3'- cGGUUGacuacUACG-GGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 31820 0.66 0.975897
Target:  5'- aGCCcGC-GGUGGUG-CCAAC-CGAGUc -3'
miRNA:   3'- -CGGuUGaCUACUACgGGUUGaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 13411 0.66 0.975631
Target:  5'- aCCAACagugaccUGGUGGUGCUCAaaaccccgGCUCGAa- -3'
miRNA:   3'- cGGUUG-------ACUACUACGGGU--------UGAGCUcg -5'
11314 5' -50.9 NC_003084.1 + 74447 0.66 0.973141
Target:  5'- cGCCAgcgcuacagugaACUGGUGAUGCCgcugggaAACaUUGAGg -3'
miRNA:   3'- -CGGU------------UGACUACUACGGg------UUG-AGCUCg -5'
11314 5' -50.9 NC_003084.1 + 44203 0.67 0.971382
Target:  5'- aUCGACUGcacaAUGUCCAcggguuccgugcaacACUCGAGCg -3'
miRNA:   3'- cGGUUGACuac-UACGGGU---------------UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 87101 0.67 0.970165
Target:  5'- cCCAACcGAUGGUGCUCGAUgaacagUUGcAGCu -3'
miRNA:   3'- cGGUUGaCUACUACGGGUUG------AGC-UCG- -5'
11314 5' -50.9 NC_003084.1 + 4839 0.67 0.966959
Target:  5'- aCCAACcGuauUGGc-CCCAGCUUGAGCg -3'
miRNA:   3'- cGGUUGaCu--ACUacGGGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 70426 0.67 0.963517
Target:  5'- gGCUgAACUGGUGcgaGUCCcgUUCGAGCu -3'
miRNA:   3'- -CGG-UUGACUACua-CGGGuuGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 55485 0.67 0.963517
Target:  5'- uCCAACUGgcGGUGCaaauuuugCAGCUcCGAGUc -3'
miRNA:   3'- cGGUUGACuaCUACGg-------GUUGA-GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 49371 0.67 0.963517
Target:  5'- gGCCGuagUUGGUGGUGCUagCAuuuaaggccACUUGAGCg -3'
miRNA:   3'- -CGGUu--GACUACUACGG--GU---------UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 81309 0.67 0.963517
Target:  5'- cCCGGCggaGAUGAUugcgaagauaGCCuCAGCcCGAGCg -3'
miRNA:   3'- cGGUUGa--CUACUA----------CGG-GUUGaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.