Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 14353 | 0.66 | 0.407459 |
Target: 5'- gGgGCCGgAcCUGCcacucaacgGGGUGACGuCGCAg -3' miRNA: 3'- gCgCGGCgUuGACG---------UCCGCUGC-GCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 14666 | 0.66 | 0.407459 |
Target: 5'- aGCGCgGCAAggacUUGgAGGCgccGugGCGCu -3' miRNA: 3'- gCGCGgCGUU----GACgUCCG---CugCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 36356 | 0.66 | 0.407459 |
Target: 5'- cCGCGCucaCGCAcCU-CAGcGCGGCGUGCc -3' miRNA: 3'- -GCGCG---GCGUuGAcGUC-CGCUGCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 43534 | 0.66 | 0.407459 |
Target: 5'- gGCGCCGa------AGGCGGCGCGUc -3' miRNA: 3'- gCGCGGCguugacgUCCGCUGCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 9162 | 0.66 | 0.398462 |
Target: 5'- uCGcCGCCGCGcaguccugaguCUGUGGGuCGGCGCGgGu -3' miRNA: 3'- -GC-GCGGCGUu----------GACGUCC-GCUGCGCgU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 45408 | 0.66 | 0.398462 |
Target: 5'- aGCGCCGuCAGCgaaaGCAuGG-GGCGCGg- -3' miRNA: 3'- gCGCGGC-GUUGa---CGU-CCgCUGCGCgu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 3139 | 0.66 | 0.397569 |
Target: 5'- gCGCGUCG-AAgaGUGGGCGcucgcugacuuccGCGCGCAc -3' miRNA: 3'- -GCGCGGCgUUgaCGUCCGC-------------UGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 5948 | 0.66 | 0.395788 |
Target: 5'- gGCGCCGUucccguccacgccgGGCUGCuggAGGCGGUGgGCc -3' miRNA: 3'- gCGCGGCG--------------UUGACG---UCCGCUGCgCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 24662 | 0.66 | 0.389594 |
Target: 5'- gCGCGCCGCGACggGCuGaGCGGCa---- -3' miRNA: 3'- -GCGCGGCGUUGa-CGuC-CGCUGcgcgu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 6288 | 0.66 | 0.389594 |
Target: 5'- cCGCGCggcgguggaGCGACUggaGCAGGCcGAgcgggaacCGCGCAg -3' miRNA: 3'- -GCGCGg--------CGUUGA---CGUCCG-CU--------GCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 19209 | 0.66 | 0.389594 |
Target: 5'- gGgGCgGCGGggGCuGGGCGcCGCGCAa -3' miRNA: 3'- gCgCGgCGUUgaCG-UCCGCuGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 29106 | 0.66 | 0.389594 |
Target: 5'- gGCGUCaGCAGCgGCGacGCGGCGCGgAa -3' miRNA: 3'- gCGCGG-CGUUGaCGUc-CGCUGCGCgU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 26133 | 0.66 | 0.389594 |
Target: 5'- aCGCgGCCGUggaacucgGGCUGCuGGCcaccGACGuCGCGg -3' miRNA: 3'- -GCG-CGGCG--------UUGACGuCCG----CUGC-GCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 24799 | 0.66 | 0.389594 |
Target: 5'- gGUGCCGCu-CaGCccgucGCGGCGCGCGg -3' miRNA: 3'- gCGCGGCGuuGaCGuc---CGCUGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 11497 | 0.66 | 0.389594 |
Target: 5'- aCGCaCCaCAcgaauCUGCGGGUGugGUGCGg -3' miRNA: 3'- -GCGcGGcGUu----GACGUCCGCugCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 2119 | 0.66 | 0.380855 |
Target: 5'- uGuCGCaCGCAuggauggGCaaGGGCGGCGCGCu -3' miRNA: 3'- gC-GCG-GCGUuga----CG--UCCGCUGCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 47723 | 0.66 | 0.372249 |
Target: 5'- uGCGCCu--GCUGaCGGGCGcgguGCGCGUn -3' miRNA: 3'- gCGCGGcguUGAC-GUCCGC----UGCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 23572 | 0.66 | 0.372249 |
Target: 5'- gGCGuuGCGAUgucGCuGGagGACGCGUAc -3' miRNA: 3'- gCGCggCGUUGa--CGuCCg-CUGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 32855 | 0.66 | 0.372249 |
Target: 5'- gCGCGCCGCGggACcGCccgggAGGCccaGCGCAu -3' miRNA: 3'- -GCGCGGCGU--UGaCG-----UCCGcugCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 18758 | 0.66 | 0.372249 |
Target: 5'- aGcCGCCGCuGgaGCGGGCGAUGgacaaaGCGa -3' miRNA: 3'- gC-GCGGCGuUgaCGUCCGCUGCg-----CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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