miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11449 3' -61.6 NC_003085.1 + 32242 0.66 0.390037
Target:  5'- -gCGCCGCGUGCUcaccaGCGGcGcugaccaacUCUCCAa -3'
miRNA:   3'- agGCGGCGCGCGG-----CGCCuU---------AGAGGUg -5'
11449 3' -61.6 NC_003085.1 + 26534 0.66 0.381387
Target:  5'- gCCGUCGaCGCgGCCuCGGAGggCUUCGCc -3'
miRNA:   3'- aGGCGGC-GCG-CGGcGCCUUa-GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 45608 0.66 0.381387
Target:  5'- gCCGUCGaCGCGCCGUGG----UCCu- -3'
miRNA:   3'- aGGCGGC-GCGCGGCGCCuuagAGGug -5'
11449 3' -61.6 NC_003085.1 + 27396 0.66 0.381387
Target:  5'- aCCGCgCGCGCGugguaccugcCCGCGGGcgcaAUCgCCGg -3'
miRNA:   3'- aGGCG-GCGCGC----------GGCGCCU----UAGaGGUg -5'
11449 3' -61.6 NC_003085.1 + 28053 0.66 0.378817
Target:  5'- --aGCCGaGCGCCuucacgccagugcaGUGGAGUCUCCu- -3'
miRNA:   3'- aggCGGCgCGCGG--------------CGCCUUAGAGGug -5'
11449 3' -61.6 NC_003085.1 + 48695 0.66 0.372865
Target:  5'- aCCGuuGCGCGgCgugGCGGAcUCgcCCACc -3'
miRNA:   3'- aGGCggCGCGCgG---CGCCUuAGa-GGUG- -5'
11449 3' -61.6 NC_003085.1 + 14060 0.66 0.369493
Target:  5'- gUCCGUCGaggccaucugcgaGCGCCuCGGA--CUCCGCc -3'
miRNA:   3'- -AGGCGGCg------------CGCGGcGCCUuaGAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 7915 0.66 0.367815
Target:  5'- aCUGCCGC-CGCgGCGGcagcagacgucaCUCCACc -3'
miRNA:   3'- aGGCGGCGcGCGgCGCCuua---------GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 1977 0.66 0.364475
Target:  5'- uUCCGCCGCGUGCaugaGCacccg-UCCACu -3'
miRNA:   3'- -AGGCGGCGCGCGg---CGccuuagAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 38059 0.66 0.364475
Target:  5'- aCCGCgGCGgugcgucaGCCgGCGGuagcgCUCCACc -3'
miRNA:   3'- aGGCGgCGCg-------CGG-CGCCuua--GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 6851 0.66 0.364475
Target:  5'- -aCGCCGCGaaugucucCGCCGaGGGAUaccacUUCCACg -3'
miRNA:   3'- agGCGGCGC--------GCGGCgCCUUA-----GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 49187 0.66 0.359503
Target:  5'- cCUGCCGC-CGCUGCuccucagugagagggGGAGgguucCUCCACu -3'
miRNA:   3'- aGGCGGCGcGCGGCG---------------CCUUa----GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 6760 0.66 0.356215
Target:  5'- cCUGCCGCGcCGUgGCGGAcggCgagagcccuUCCGCu -3'
miRNA:   3'- aGGCGGCGC-GCGgCGCCUua-G---------AGGUG- -5'
11449 3' -61.6 NC_003085.1 + 10142 0.66 0.356215
Target:  5'- aCCGCgaacUGCGCGgCGgGGAGUa-CCGCg -3'
miRNA:   3'- aGGCG----GCGCGCgGCgCCUUAgaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 14536 0.66 0.356215
Target:  5'- cUCCGCCGCGUGC-GCcugca-UCCACu -3'
miRNA:   3'- -AGGCGGCGCGCGgCGccuuagAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 46693 0.66 0.355397
Target:  5'- gCCGCCGCuGCcugcuuccgGCCaGCGGAGUCcuugggcagcgccUUCGCg -3'
miRNA:   3'- aGGCGGCG-CG---------CGG-CGCCUUAG-------------AGGUG- -5'
11449 3' -61.6 NC_003085.1 + 24835 0.66 0.352949
Target:  5'- cUCCGCCGaggugaaGCGCUGCagcaccuGGAgcgaguuggaguacGUCgUCCACg -3'
miRNA:   3'- -AGGCGGCg------CGCGGCG-------CCU--------------UAG-AGGUG- -5'
11449 3' -61.6 NC_003085.1 + 32476 0.66 0.348089
Target:  5'- gUCGCCGUcgGCGUCGCGGGcccggagcgucAUCUCg-- -3'
miRNA:   3'- aGGCGGCG--CGCGGCGCCU-----------UAGAGgug -5'
11449 3' -61.6 NC_003085.1 + 46458 0.66 0.348089
Target:  5'- gUCGuCCGUGCGCCcaGCGGGGagcgguUC-CCACu -3'
miRNA:   3'- aGGC-GGCGCGCGG--CGCCUU------AGaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 2607 0.67 0.340095
Target:  5'- -aCGCUGCGCGCgaagaaGCGGAGcgcuggCUCC-Ca -3'
miRNA:   3'- agGCGGCGCGCGg-----CGCCUUa-----GAGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.