Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11510 | 5' | -65.5 | NC_003085.1 | + | 24578 | 0.65 | 0.261601 |
Target: 5'- aGGCGGCccuGGaACUGGGCGccGCUgcaggugagguugCCGGCc -3' miRNA: 3'- -CCGCCGu--CC-UGGCCCGC--CGGa------------GGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 24186 | 0.66 | 0.257848 |
Target: 5'- cGCGGUgAGGuagaCGGGCGcGCCgacgaCGACg -3' miRNA: 3'- cCGCCG-UCCug--GCCCGC-CGGag---GCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 37340 | 0.66 | 0.257848 |
Target: 5'- cGGuCGGCaccgaAGGcCuCGGG-GGCgUCCGACu -3' miRNA: 3'- -CC-GCCG-----UCCuG-GCCCgCCGgAGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 35955 | 0.66 | 0.257848 |
Target: 5'- uGGCGuCGGGaACCGuuucgcguaGGgGGCCaggCCGACg -3' miRNA: 3'- -CCGCcGUCC-UGGC---------CCgCCGGa--GGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 31659 | 0.66 | 0.251692 |
Target: 5'- aGGCGGCAccGGGgCGGGCGGUggaUgUGGg -3' miRNA: 3'- -CCGCCGU--CCUgGCCCGCCGg--AgGCUg -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 46263 | 0.66 | 0.251692 |
Target: 5'- uGCGGCAucGGGCCaGGGCccgcgagaggacGGCUacuUCUGGCu -3' miRNA: 3'- cCGCCGU--CCUGG-CCCG------------CCGG---AGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 46217 | 0.66 | 0.251692 |
Target: 5'- uGGCgGGCgAGuGugUGGGcCGGCCcagguagcgCCGGCa -3' miRNA: 3'- -CCG-CCG-UC-CugGCCC-GCCGGa--------GGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 39442 | 0.66 | 0.249869 |
Target: 5'- uGGCGcaaAGGACuCGGGCGGCaaugugucgugugagUCGGCg -3' miRNA: 3'- -CCGCcg-UCCUG-GCCCGCCGga-------------GGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 9208 | 0.66 | 0.245657 |
Target: 5'- gGGgGGCGGGAC--GuaGGCC-CCGGCg -3' miRNA: 3'- -CCgCCGUCCUGgcCcgCCGGaGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 26947 | 0.66 | 0.245657 |
Target: 5'- cGCGGCGcu-UCGuGCGGCUUCCGAUg -3' miRNA: 3'- cCGCCGUccuGGCcCGCCGGAGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 18107 | 0.66 | 0.239743 |
Target: 5'- aGCGGCuGcGCauGGCGGCCUaCCGGu -3' miRNA: 3'- cCGCCGuCcUGgcCCGCCGGA-GGCUg -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 32387 | 0.66 | 0.233948 |
Target: 5'- -uCGGaCuGGugUGGGCGGCCguacuUCuCGACg -3' miRNA: 3'- ccGCC-GuCCugGCCCGCCGG-----AG-GCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 11970 | 0.66 | 0.233948 |
Target: 5'- gGGCGGCGugagcGGAUUGGuccucuUGGCCUgCGGCa -3' miRNA: 3'- -CCGCCGU-----CCUGGCCc-----GCCGGAgGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 11308 | 0.66 | 0.232804 |
Target: 5'- cGCGGCGGGgagcgccACCaccaacgccagcaGGGCGGCgagcCUCaCGGCa -3' miRNA: 3'- cCGCCGUCC-------UGG-------------CCCGCCG----GAG-GCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 48494 | 0.66 | 0.228272 |
Target: 5'- cGGCGGCGuGuccugccCCGGcaGCGGCCugUCUGGCa -3' miRNA: 3'- -CCGCCGUcCu------GGCC--CGCCGG--AGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 36957 | 0.67 | 0.222162 |
Target: 5'- --aGGCAGGGCCGcGG-GGCCauguuggcgccgcUUCGACu -3' miRNA: 3'- ccgCCGUCCUGGC-CCgCCGG-------------AGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 48798 | 0.67 | 0.217268 |
Target: 5'- aGGUGGCcGGcgacguCCGGGCGGUgCUCgagcgccuCGACg -3' miRNA: 3'- -CCGCCGuCCu-----GGCCCGCCG-GAG--------GCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 12241 | 0.67 | 0.215122 |
Target: 5'- cGGCGGCuGGGCCGccagaauugaaGGCCgCUGGCg -3' miRNA: 3'- -CCGCCGuCCUGGCccg--------CCGGaGGCUG- -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 48526 | 0.67 | 0.206721 |
Target: 5'- cGGCGGCgAGGGCgCGGGCcuuccaGuCCUCCu-- -3' miRNA: 3'- -CCGCCG-UCCUG-GCCCGc-----C-GGAGGcug -5' |
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11510 | 5' | -65.5 | NC_003085.1 | + | 7333 | 0.67 | 0.205691 |
Target: 5'- aGGCGGCugAGGACgCGGGCuacacgcgccccuggGcGCCgcuccaguacgaggCCGACg -3' miRNA: 3'- -CCGCCG--UCCUG-GCCCG---------------C-CGGa-------------GGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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