miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 3' -54.6 NC_003085.1 + 3945 0.66 0.77384
Target:  5'- gCGACAgacggCGGGcgcGCCGU-CGAcGCGCc -3'
miRNA:   3'- gGCUGUa----GCCUu--CGGCGuGCUuCGCG- -5'
11561 3' -54.6 NC_003085.1 + 27935 0.66 0.77384
Target:  5'- cCCGggguACGUCGGca-CCGuCACGAggAGUGCg -3'
miRNA:   3'- -GGC----UGUAGCCuucGGC-GUGCU--UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 31921 0.66 0.77384
Target:  5'- -aGGCA-CGGGAGCaGCACccGGUGCc -3'
miRNA:   3'- ggCUGUaGCCUUCGgCGUGcuUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 3684 0.66 0.77384
Target:  5'- cUCGaguuGCGUUGGGAuGCgGcCACGcAGCGCg -3'
miRNA:   3'- -GGC----UGUAGCCUU-CGgC-GUGCuUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 26162 0.66 0.77384
Target:  5'- aCCGACGUCGcGGAcCCGUAUGcgucCGCu -3'
miRNA:   3'- -GGCUGUAGC-CUUcGGCGUGCuuc-GCG- -5'
11561 3' -54.6 NC_003085.1 + 6808 0.66 0.77384
Target:  5'- gCCGGgcaGUCGGAccaucggucaucGGCgGCAUGGgugcGGUGCa -3'
miRNA:   3'- -GGCUg--UAGCCU------------UCGgCGUGCU----UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 38087 0.66 0.77384
Target:  5'- gUCGcCGUUGG-GGCCGaCGCGGugugAGCGUc -3'
miRNA:   3'- -GGCuGUAGCCuUCGGC-GUGCU----UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 22899 0.66 0.77384
Target:  5'- gCCGACGuggcaaUCGGAgucggGGCCGUcgccuccuggGCGgGAGCGg -3'
miRNA:   3'- -GGCUGU------AGCCU-----UCGGCG----------UGC-UUCGCg -5'
11561 3' -54.6 NC_003085.1 + 13076 0.66 0.766774
Target:  5'- gCGACAaggaguugcagcaGGAAcuggcacGCCGCGCuGAGGUGCg -3'
miRNA:   3'- gGCUGUag-----------CCUU-------CGGCGUG-CUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 45868 0.66 0.763725
Target:  5'- gCGAgGUUGGAGGCagGgACGgcGCGg -3'
miRNA:   3'- gGCUgUAGCCUUCGg-CgUGCuuCGCg -5'
11561 3' -54.6 NC_003085.1 + 26915 0.66 0.763725
Target:  5'- aUCGAgGguggCGGggGCa-CACGccuGGCGCg -3'
miRNA:   3'- -GGCUgUa---GCCuuCGgcGUGCu--UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 13290 0.66 0.763725
Target:  5'- gCGaACAUCGGAGGCCccaGCG-AGCc- -3'
miRNA:   3'- gGC-UGUAGCCUUCGGcg-UGCuUCGcg -5'
11561 3' -54.6 NC_003085.1 + 25842 0.66 0.763725
Target:  5'- cCUGcACGUCGGAcuuGCC-CGCGAGGaauGCc -3'
miRNA:   3'- -GGC-UGUAGCCUu--CGGcGUGCUUCg--CG- -5'
11561 3' -54.6 NC_003085.1 + 10729 0.66 0.760664
Target:  5'- aCGGCAagCGGAcgcuguugcuguccGGCCaCACG-GGCGCc -3'
miRNA:   3'- gGCUGUa-GCCU--------------UCGGcGUGCuUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 26349 0.66 0.753475
Target:  5'- aCCaGACGggaUGGAA-CCGCACGcAGCGg -3'
miRNA:   3'- -GG-CUGUa--GCCUUcGGCGUGCuUCGCg -5'
11561 3' -54.6 NC_003085.1 + 38057 0.66 0.753475
Target:  5'- cCCGACAUguggUGGugcGUCGCggagACGGcAGCGCa -3'
miRNA:   3'- -GGCUGUA----GCCuu-CGGCG----UGCU-UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 16999 0.66 0.753475
Target:  5'- gCCGACggCGacGAGaaGCGCGGaugGGCGCu -3'
miRNA:   3'- -GGCUGuaGCc-UUCggCGUGCU---UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 47469 0.66 0.753475
Target:  5'- -gGuCAUCcaGGAGGCCgaGCGCGAAG-GCu -3'
miRNA:   3'- ggCuGUAG--CCUUCGG--CGUGCUUCgCG- -5'
11561 3' -54.6 NC_003085.1 + 44817 0.66 0.753475
Target:  5'- aCCGAagcgagcgCGGAacucGGCUucccguGCACGAAGaCGCg -3'
miRNA:   3'- -GGCUgua-----GCCU----UCGG------CGUGCUUC-GCG- -5'
11561 3' -54.6 NC_003085.1 + 10781 0.66 0.753475
Target:  5'- gCCGuCAgccagugccUCGcGGGCCGCGCGcAGgGCu -3'
miRNA:   3'- -GGCuGU---------AGCcUUCGGCGUGCuUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.