miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11596 5' -58 NC_003085.1 + 21334 0.66 0.586829
Target:  5'- -aGCGuCGGccGCAGCaACuGCACCUGCu- -3'
miRNA:   3'- gaUGC-GCC--UGUCGcUG-CGUGGACGcc -5'
11596 5' -58 NC_003085.1 + 13552 0.66 0.586829
Target:  5'- cCUGCGCGGcUGGcCGugGCAuggcCCUG-GGa -3'
miRNA:   3'- -GAUGCGCCuGUC-GCugCGU----GGACgCC- -5'
11596 5' -58 NC_003085.1 + 36446 0.66 0.586829
Target:  5'- --gUGCGGAgGGCGGCGC-CUcaugGCGa -3'
miRNA:   3'- gauGCGCCUgUCGCUGCGuGGa---CGCc -5'
11596 5' -58 NC_003085.1 + 34910 0.66 0.583616
Target:  5'- -gGCGUGG-CGGCcuacgaguggugcaGGCGCACgCgGCGGa -3'
miRNA:   3'- gaUGCGCCuGUCG--------------CUGCGUG-GaCGCC- -5'
11596 5' -58 NC_003085.1 + 36016 0.66 0.576134
Target:  5'- gCUugGCGGAUGGCGGC-CAUggGCa- -3'
miRNA:   3'- -GAugCGCCUGUCGCUGcGUGgaCGcc -5'
11596 5' -58 NC_003085.1 + 227 0.66 0.576134
Target:  5'- ---aGCGGGCAGUGGaagagGCGCCUcgagaaGUGGa -3'
miRNA:   3'- gaugCGCCUGUCGCUg----CGUGGA------CGCC- -5'
11596 5' -58 NC_003085.1 + 41006 0.66 0.576134
Target:  5'- -gGCGCGucauguagagcGACAGgGACgGCugCUGCuGGc -3'
miRNA:   3'- gaUGCGC-----------CUGUCgCUG-CGugGACG-CC- -5'
11596 5' -58 NC_003085.1 + 29351 0.66 0.565483
Target:  5'- uCUAgGcCGGACuccAGCccCGcCACCUGCGGc -3'
miRNA:   3'- -GAUgC-GCCUG---UCGcuGC-GUGGACGCC- -5'
11596 5' -58 NC_003085.1 + 24202 0.66 0.565483
Target:  5'- -gGCGCGccGACGaCGACGC-CCgccGCGGa -3'
miRNA:   3'- gaUGCGC--CUGUcGCUGCGuGGa--CGCC- -5'
11596 5' -58 NC_003085.1 + 29100 0.66 0.565483
Target:  5'- uUGCcCGGcgucagcaGCGGCGACGCGgC-GCGGa -3'
miRNA:   3'- gAUGcGCC--------UGUCGCUGCGUgGaCGCC- -5'
11596 5' -58 NC_003085.1 + 21023 0.66 0.565483
Target:  5'- -gACGCGGACGGCaGcCGCAaucUCUG-GGc -3'
miRNA:   3'- gaUGCGCCUGUCG-CuGCGU---GGACgCC- -5'
11596 5' -58 NC_003085.1 + 16996 0.66 0.565483
Target:  5'- -gACGCcGACGGCGACGagaAgC-GCGGa -3'
miRNA:   3'- gaUGCGcCUGUCGCUGCg--UgGaCGCC- -5'
11596 5' -58 NC_003085.1 + 8724 0.66 0.565483
Target:  5'- -cACGUGG-CAGUGcuaccuGCGCGCCUucGUGGc -3'
miRNA:   3'- gaUGCGCCuGUCGC------UGCGUGGA--CGCC- -5'
11596 5' -58 NC_003085.1 + 5908 0.66 0.554884
Target:  5'- -gACGCGGGCcuaucucgcgcaAGCugGACGCGCCgccuucgGCGc -3'
miRNA:   3'- gaUGCGCCUG------------UCG--CUGCGUGGa------CGCc -5'
11596 5' -58 NC_003085.1 + 44512 0.66 0.554884
Target:  5'- uCUGCGCGGugGuGCccaGCACCcGcCGGa -3'
miRNA:   3'- -GAUGCGCCugU-CGcugCGUGGaC-GCC- -5'
11596 5' -58 NC_003085.1 + 47914 0.66 0.554884
Target:  5'- -gACGCGcacggccucgcGACAGCaGACGCuggagucacGCCUGgCGGc -3'
miRNA:   3'- gaUGCGC-----------CUGUCG-CUGCG---------UGGAC-GCC- -5'
11596 5' -58 NC_003085.1 + 14169 0.66 0.554884
Target:  5'- cCUGCGCGauGACAuGU-AUGCACCUGUGc -3'
miRNA:   3'- -GAUGCGC--CUGU-CGcUGCGUGGACGCc -5'
11596 5' -58 NC_003085.1 + 15871 0.66 0.553828
Target:  5'- -gGCGUGGGCaccugacgcagguAGUGACGUGuCCagGCGGa -3'
miRNA:   3'- gaUGCGCCUG-------------UCGCUGCGU-GGa-CGCC- -5'
11596 5' -58 NC_003085.1 + 27232 0.66 0.544345
Target:  5'- uCUACGCGGACga-GACGaaugGCCUGUuccGGu -3'
miRNA:   3'- -GAUGCGCCUGucgCUGCg---UGGACG---CC- -5'
11596 5' -58 NC_003085.1 + 14955 0.66 0.544345
Target:  5'- aCUGCGCGaagcGCuGCGGCcCACCUcCGGg -3'
miRNA:   3'- -GAUGCGCc---UGuCGCUGcGUGGAcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.