miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12345 3' -53 NC_003324.1 + 53085 0.66 0.874625
Target:  5'- uCAGCGuaaUCCuucuGGAuCCGCUUCauuggcggcagGUCGCGCu -3'
miRNA:   3'- -GUUGC---AGGu---UUU-GGCGGAG-----------CAGCGCG- -5'
12345 3' -53 NC_003324.1 + 19043 0.66 0.872268
Target:  5'- -cGCGUCauucGAGCCuuugcagcccauuuGCCcuuugUCGUCGCGCu -3'
miRNA:   3'- guUGCAGgu--UUUGG--------------CGG-----AGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 49883 0.66 0.866682
Target:  5'- cCGGCGggcaAAGAUCGCUgCGUCgGCGCg -3'
miRNA:   3'- -GUUGCagg-UUUUGGCGGaGCAG-CGCG- -5'
12345 3' -53 NC_003324.1 + 20846 0.66 0.866682
Target:  5'- ---gGUCCAugucGGCCGCaucCUCGaCGUGCa -3'
miRNA:   3'- guugCAGGUu---UUGGCG---GAGCaGCGCG- -5'
12345 3' -53 NC_003324.1 + 39682 0.66 0.858492
Target:  5'- aCAuCGUgCuuGAugUGCCgcaCGUCGCGCc -3'
miRNA:   3'- -GUuGCAgGu-UUugGCGGa--GCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 24504 0.66 0.850064
Target:  5'- nCAAUGUUCGc-AUCGCC-CGaCGCGCa -3'
miRNA:   3'- -GUUGCAGGUuuUGGCGGaGCaGCGCG- -5'
12345 3' -53 NC_003324.1 + 33418 0.66 0.850064
Target:  5'- gAACG-CCcGAGCCGCUUCaUCgGCGUu -3'
miRNA:   3'- gUUGCaGGuUUUGGCGGAGcAG-CGCG- -5'
12345 3' -53 NC_003324.1 + 20676 0.66 0.850064
Target:  5'- gCGAUGcUUgGAAGCCGUCUCuucgagcuccGUUGCGCc -3'
miRNA:   3'- -GUUGC-AGgUUUUGGCGGAG----------CAGCGCG- -5'
12345 3' -53 NC_003324.1 + 44670 0.66 0.841405
Target:  5'- gCAACGggcaguUCCuc-GCCGCCgUGUCGCuGCc -3'
miRNA:   3'- -GUUGC------AGGuuuUGGCGGaGCAGCG-CG- -5'
12345 3' -53 NC_003324.1 + 5816 0.66 0.841405
Target:  5'- aAACGguagCCGGuGCCGCCaacggagguuUCGgUUGCGCc -3'
miRNA:   3'- gUUGCa---GGUUuUGGCGG----------AGC-AGCGCG- -5'
12345 3' -53 NC_003324.1 + 19374 0.66 0.832526
Target:  5'- uCAGCGauggaUCGAcGCCGgCgcgCGUCGCGCc -3'
miRNA:   3'- -GUUGCa----GGUUuUGGCgGa--GCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 24925 0.67 0.823433
Target:  5'- gCAGauugCCAAGacgGCCGaCCUUGUCgGCGCg -3'
miRNA:   3'- -GUUgca-GGUUU---UGGC-GGAGCAG-CGCG- -5'
12345 3' -53 NC_003324.1 + 29460 0.67 0.823433
Target:  5'- uCGACGaugaCAcgGCCGCCUggcugcgggcgCGUCGgGCg -3'
miRNA:   3'- -GUUGCag--GUuuUGGCGGA-----------GCAGCgCG- -5'
12345 3' -53 NC_003324.1 + 16304 0.67 0.823433
Target:  5'- -cGCGUCggCAcgGCCuGCCcCGUCGCGg -3'
miRNA:   3'- guUGCAG--GUuuUGG-CGGaGCAGCGCg -5'
12345 3' -53 NC_003324.1 + 24529 0.67 0.823433
Target:  5'- gAAUGUCCAGGACgUGCag-GUCgGCGCa -3'
miRNA:   3'- gUUGCAGGUUUUG-GCGgagCAG-CGCG- -5'
12345 3' -53 NC_003324.1 + 53717 0.67 0.823433
Target:  5'- aCGGCGguaguUCUuuuGGAGCCGgCgacguUCGUCGCGCa -3'
miRNA:   3'- -GUUGC-----AGG---UUUUGGCgG-----AGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 41330 0.67 0.814138
Target:  5'- aCGAUGUC--GAACgGCCUCGaaaUCgGCGCu -3'
miRNA:   3'- -GUUGCAGguUUUGgCGGAGC---AG-CGCG- -5'
12345 3' -53 NC_003324.1 + 7796 0.67 0.804651
Target:  5'- -uGCGgCCGu-GCUGaCCUCGuUCGCGCc -3'
miRNA:   3'- guUGCaGGUuuUGGC-GGAGC-AGCGCG- -5'
12345 3' -53 NC_003324.1 + 31336 0.67 0.804651
Target:  5'- aAGCGUugcaucgaucCCAGGAugcCCGCCUCGUCaucUGCa -3'
miRNA:   3'- gUUGCA----------GGUUUU---GGCGGAGCAGc--GCG- -5'
12345 3' -53 NC_003324.1 + 41291 0.67 0.804651
Target:  5'- uCGACGUCCAucAAGCCgugcgGCCUUuccaUCGCGa -3'
miRNA:   3'- -GUUGCAGGU--UUUGG-----CGGAGc---AGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.