miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12357 5' -58.3 NC_003324.1 + 35302 0.66 0.568231
Target:  5'- aGuCCGAucgcGCCGGCgGAuuGCGC-CGGCUg -3'
miRNA:   3'- gC-GGUUu---CGGUCGgUU--CGCGuGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 399 0.66 0.568231
Target:  5'- cCGCC-AAGCCAuGCCuauugggcuGGCGCAUcccgGaGCCc -3'
miRNA:   3'- -GCGGuUUCGGU-CGGu--------UCGCGUG----C-CGG- -5'
12357 5' -58.3 NC_003324.1 + 40295 0.66 0.568231
Target:  5'- -aCCGAAGCCGGUgAaguucgagaAGCGCuucguCGGCa -3'
miRNA:   3'- gcGGUUUCGGUCGgU---------UCGCGu----GCCGg -5'
12357 5' -58.3 NC_003324.1 + 30357 0.66 0.568231
Target:  5'- cCGUCAGAGCCuugauGGCGUcgcccuCGGCCa -3'
miRNA:   3'- -GCGGUUUCGGucgguUCGCGu-----GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 14516 0.66 0.568231
Target:  5'- aCGCCGgcauGGGCCcagAGCCGGGCGUGauccccaucgaGGCg -3'
miRNA:   3'- -GCGGU----UUCGG---UCGGUUCGCGUg----------CCGg -5'
12357 5' -58.3 NC_003324.1 + 25917 0.66 0.567163
Target:  5'- gCGCCGcauCCAGCUugaggacgaaaccGGGCGCGCaGGCg -3'
miRNA:   3'- -GCGGUuucGGUCGG-------------UUCGCGUG-CCGg -5'
12357 5' -58.3 NC_003324.1 + 52657 0.66 0.567163
Target:  5'- aCGCCGAAuugauccGCCGcauGCgCGAGCGUggAUGGUCg -3'
miRNA:   3'- -GCGGUUU-------CGGU---CG-GUUCGCG--UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 15675 0.66 0.56183
Target:  5'- aCGCgauCAAGGCgGGCCAGcgacagggguacauuGCaCACGGCUa -3'
miRNA:   3'- -GCG---GUUUCGgUCGGUU---------------CGcGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 53751 0.66 0.557573
Target:  5'- uCGCCGuaucAAGCuCGGCgcucCAAGgugcCGCACGGCg -3'
miRNA:   3'- -GCGGU----UUCG-GUCG----GUUC----GCGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 29190 0.66 0.557573
Target:  5'- uGUCGAAgguuauGCCGGCaGAGCGCAagcgucUGGCUg -3'
miRNA:   3'- gCGGUUU------CGGUCGgUUCGCGU------GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 20289 0.66 0.557573
Target:  5'- gGCU---GCCGGCCAuaccgGGCGCguuacGCGcGCCu -3'
miRNA:   3'- gCGGuuuCGGUCGGU-----UCGCG-----UGC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 54708 0.66 0.557573
Target:  5'- aGCCAAAuCCGGUCGAaCGCucgauCGGCg -3'
miRNA:   3'- gCGGUUUcGGUCGGUUcGCGu----GCCGg -5'
12357 5' -58.3 NC_003324.1 + 42852 0.66 0.546973
Target:  5'- gGCCAAGGCaCGuucuccguuGCCGAuccGCGCAUGGg- -3'
miRNA:   3'- gCGGUUUCG-GU---------CGGUU---CGCGUGCCgg -5'
12357 5' -58.3 NC_003324.1 + 29347 0.66 0.546973
Target:  5'- cCGCCGAucgagcGCgAGCCcGGCGaUGCaGGCCc -3'
miRNA:   3'- -GCGGUUu-----CGgUCGGuUCGC-GUG-CCGG- -5'
12357 5' -58.3 NC_003324.1 + 3169 0.66 0.546973
Target:  5'- uCGCCucgaauGGCaagAGCgGgAGCGCcguGCGGCCa -3'
miRNA:   3'- -GCGGuu----UCGg--UCGgU-UCGCG---UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 2754 0.66 0.546973
Target:  5'- uGCCGAAG-CGGCCAccgcgcuggaAGgGCAaGGUCg -3'
miRNA:   3'- gCGGUUUCgGUCGGU----------UCgCGUgCCGG- -5'
12357 5' -58.3 NC_003324.1 + 32163 0.66 0.545917
Target:  5'- aGCCGAGGCgCAGCgaggccgaaGAGCcauuugacgccuuGCuCGGCCg -3'
miRNA:   3'- gCGGUUUCG-GUCGg--------UUCG-------------CGuGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 29592 0.66 0.543806
Target:  5'- cCGCCugcgaaagagcaGAAGCCGGuuaccgagaugcgcCCGAcGCGCccgcagccagGCGGCCg -3'
miRNA:   3'- -GCGG------------UUUCGGUC--------------GGUU-CGCG----------UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 38080 0.66 0.536438
Target:  5'- gCGCCuu--CUGGCgAAGCGCGuCGGCg -3'
miRNA:   3'- -GCGGuuucGGUCGgUUCGCGU-GCCGg -5'
12357 5' -58.3 NC_003324.1 + 14383 0.66 0.536438
Target:  5'- uGCCAAucaacgcGCCGcaaCCGAGCGCGCaaacGCCu -3'
miRNA:   3'- gCGGUUu------CGGUc--GGUUCGCGUGc---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.