miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 47282 0.66 0.388548
Target:  5'- -uGGC-CGcCGUCGG-CGCCcUCGGUCg -3'
miRNA:   3'- cgUCGaGC-GCGGCCaGCGGcAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 44607 0.66 0.388548
Target:  5'- aGCAGCgCGUacgaGCUGGgcUCGCCcUCGGgCg -3'
miRNA:   3'- -CGUCGaGCG----CGGCC--AGCGGcAGCCgG- -5'
12771 3' -62.7 NC_003387.1 + 16915 0.66 0.388548
Target:  5'- -gAGCaUCGCGCCGacggCGCCGa-GGCa -3'
miRNA:   3'- cgUCG-AGCGCGGCca--GCGGCagCCGg -5'
12771 3' -62.7 NC_003387.1 + 8282 0.66 0.388548
Target:  5'- cGCAGCgccucgugCGCGUCGGcgggcagcaUCGCgagcacagCGUCaGCCg -3'
miRNA:   3'- -CGUCGa-------GCGCGGCC---------AGCG--------GCAGcCGG- -5'
12771 3' -62.7 NC_003387.1 + 38631 0.66 0.388548
Target:  5'- cGCAgGC-CGCGCUGG-CGCUGcaguucCGGCg -3'
miRNA:   3'- -CGU-CGaGCGCGGCCaGCGGCa-----GCCGg -5'
12771 3' -62.7 NC_003387.1 + 11387 0.66 0.388548
Target:  5'- uGCGGCgaucggCGCcacGCUGGcCGCgaUCGGCCc -3'
miRNA:   3'- -CGUCGa-----GCG---CGGCCaGCGgcAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 32872 0.66 0.388548
Target:  5'- cCAGCgcCGCGUCGG-CGUCGUCGa-- -3'
miRNA:   3'- cGUCGa-GCGCGGCCaGCGGCAGCcgg -5'
12771 3' -62.7 NC_003387.1 + 48195 0.66 0.380107
Target:  5'- aGguGCcCGCaCCGG-CGgCGgCGGCCg -3'
miRNA:   3'- -CguCGaGCGcGGCCaGCgGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 8068 0.66 0.380107
Target:  5'- gGCGGCcCGCGCUaaccCGCUGcCGGUCg -3'
miRNA:   3'- -CGUCGaGCGCGGcca-GCGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 30238 0.66 0.380107
Target:  5'- -aGGCcgUCGC-CCGGUacgaCGCCG-CGGUCg -3'
miRNA:   3'- cgUCG--AGCGcGGCCA----GCGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 49800 0.66 0.380107
Target:  5'- cGCAGUUCGacgagaGCC--UCGCCcG-CGGCCu -3'
miRNA:   3'- -CGUCGAGCg-----CGGccAGCGG-CaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 11885 0.66 0.380107
Target:  5'- aGC-GCgUCGCGCacgauCGG-CGCCGUCuugugcccuuuGGCCu -3'
miRNA:   3'- -CGuCG-AGCGCG-----GCCaGCGGCAG-----------CCGG- -5'
12771 3' -62.7 NC_003387.1 + 16178 0.66 0.380107
Target:  5'- cCAGCUUccaauaggcgGCGUCGGU-GCUGUCGGg- -3'
miRNA:   3'- cGUCGAG----------CGCGGCCAgCGGCAGCCgg -5'
12771 3' -62.7 NC_003387.1 + 33399 0.66 0.380107
Target:  5'- --cGC-CGCGCUcGUCGCUGuacUCGGUCa -3'
miRNA:   3'- cguCGaGCGCGGcCAGCGGC---AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 48378 0.66 0.380107
Target:  5'- cCAGUcgcuuacgUUGCGCUGGUgCGCCuucUCGGCg -3'
miRNA:   3'- cGUCG--------AGCGCGGCCA-GCGGc--AGCCGg -5'
12771 3' -62.7 NC_003387.1 + 3655 0.66 0.37179
Target:  5'- nCGGCUCGUGCCccg-GCUGagCGGCCu -3'
miRNA:   3'- cGUCGAGCGCGGccagCGGCa-GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 14395 0.66 0.37179
Target:  5'- -aGGaCUCGUGgUGGUCGUCGU-GGUCu -3'
miRNA:   3'- cgUC-GAGCGCgGCCAGCGGCAgCCGG- -5'
12771 3' -62.7 NC_003387.1 + 14073 0.66 0.371789
Target:  5'- uGCGGauugaUGCGCCGGaacugcagCGCCagcgCGGCCu -3'
miRNA:   3'- -CGUCga---GCGCGGCCa-------GCGGca--GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 1446 0.66 0.370965
Target:  5'- -gGGCUCGgggucgucguccuCGUCgaGGUCGUCGagGGCCa -3'
miRNA:   3'- cgUCGAGC-------------GCGG--CCAGCGGCagCCGG- -5'
12771 3' -62.7 NC_003387.1 + 7018 0.66 0.370965
Target:  5'- aGCAGCUCG-GCCGcuuUCGC-GUucaacggcaggccCGGCCg -3'
miRNA:   3'- -CGUCGAGCgCGGCc--AGCGgCA-------------GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.