miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 3' -60.7 NC_003387.1 + 50246 0.66 0.440473
Target:  5'- --gGCGCCGUACGUCaGCGCcgggcgguGCACCu- -3'
miRNA:   3'- uagCGCGGUGUGCAG-CGCG--------CGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 25455 0.66 0.440473
Target:  5'- -gCGCGCUGCccGCGUCGCggcucaugcgGCGCAUCc- -3'
miRNA:   3'- uaGCGCGGUG--UGCAGCG----------CGCGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 48131 0.66 0.440473
Target:  5'- -aCGUGgcagacCCGCGCGcagCGCGC-CACCGAg -3'
miRNA:   3'- uaGCGC------GGUGUGCa--GCGCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 22153 0.66 0.440473
Target:  5'- cUCGCGgCACG----GCGCGUACCGGc -3'
miRNA:   3'- uAGCGCgGUGUgcagCGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 5845 0.66 0.440473
Target:  5'- -cUGCGCCGCAgGUgGgG-GCGCCGc -3'
miRNA:   3'- uaGCGCGGUGUgCAgCgCgCGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 6878 0.66 0.431107
Target:  5'- -aCGCcgGUCGC-CGUCGUG-GCACCGGc -3'
miRNA:   3'- uaGCG--CGGUGuGCAGCGCgCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 48883 0.66 0.431107
Target:  5'- cGUCgGCGCCGCcuacCGCGCGCcCUGAc -3'
miRNA:   3'- -UAG-CGCGGUGugcaGCGCGCGuGGCU- -5'
12773 3' -60.7 NC_003387.1 + 48730 0.66 0.430177
Target:  5'- -gUGCGCCGCGacgaGUccaugacCGCGCGgguCGCCGAg -3'
miRNA:   3'- uaGCGCGGUGUg---CA-------GCGCGC---GUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 23053 0.66 0.421859
Target:  5'- -gCGUGCCGaucacgcacUACGcCGUGCGCaagGCCGAc -3'
miRNA:   3'- uaGCGCGGU---------GUGCaGCGCGCG---UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 51426 0.66 0.421859
Target:  5'- cGUCGC-CCGCcaggGCGUCGagGCGCAUCa- -3'
miRNA:   3'- -UAGCGcGGUG----UGCAGCg-CGCGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 4779 0.66 0.421859
Target:  5'- uUCGCGgcCCACACGgCGuCGUGCccaugccugccGCCGAc -3'
miRNA:   3'- uAGCGC--GGUGUGCaGC-GCGCG-----------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 37398 0.66 0.421859
Target:  5'- cUCGacgaGCCAguCGUCGcCGCGCagcacaaugucGCCGGu -3'
miRNA:   3'- uAGCg---CGGUguGCAGC-GCGCG-----------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 46448 0.66 0.421859
Target:  5'- gGUCGCGUCGuCgaugACGUUcuCGUGCACCGGg -3'
miRNA:   3'- -UAGCGCGGU-G----UGCAGc-GCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 21549 0.66 0.421859
Target:  5'- -gCGaCGCC-CGCGUCGuCGUGCagACCGu -3'
miRNA:   3'- uaGC-GCGGuGUGCAGC-GCGCG--UGGCu -5'
12773 3' -60.7 NC_003387.1 + 135 0.66 0.421859
Target:  5'- gGUCGC-CCuCGCGaucCGCGC-CGCCGAg -3'
miRNA:   3'- -UAGCGcGGuGUGCa--GCGCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 30848 0.66 0.42094
Target:  5'- -cUGCGCCcauagcagcucguGCGCGUCGgcaccugGUGCGCCGGu -3'
miRNA:   3'- uaGCGCGG-------------UGUGCAGCg------CGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 51802 0.66 0.416367
Target:  5'- cGUCGUGUUAgGCGUCuugauGCacagcgcgaacacgaGCGCGCCGAg -3'
miRNA:   3'- -UAGCGCGGUgUGCAG-----CG---------------CGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 18332 0.66 0.412731
Target:  5'- --gGCGUgGC-CGUCGUGCcCGCCGGu -3'
miRNA:   3'- uagCGCGgUGuGCAGCGCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 26175 0.66 0.412731
Target:  5'- --gGCGUCAUGuCGUCGCGUGCuuGCCu- -3'
miRNA:   3'- uagCGCGGUGU-GCAGCGCGCG--UGGcu -5'
12773 3' -60.7 NC_003387.1 + 5713 0.66 0.412731
Target:  5'- -gCGUGCC-CGCGUCGuCGCugACCGGc -3'
miRNA:   3'- uaGCGCGGuGUGCAGC-GCGcgUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.