miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 22965 0.66 0.735071
Target:  5'- uGGGGCGCcccgGUCAUCGUGucgggcGGCGCCgacgacggcaaggccCGCa -3'
miRNA:   3'- -CUCCGCG----UAGUGGCAC------UUGUGGa--------------GCG- -5'
12775 5' -55.1 NC_003387.1 + 49064 0.66 0.734012
Target:  5'- -uGGCGC-UCACCG-GGcaGgCUCGCg -3'
miRNA:   3'- cuCCGCGuAGUGGCaCUugUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 32192 0.66 0.734012
Target:  5'- cGAGcuGCGCgucGUCACCGacGAGCGCgaCGCc -3'
miRNA:   3'- -CUC--CGCG---UAGUGGCa-CUUGUGgaGCG- -5'
12775 5' -55.1 NC_003387.1 + 18870 0.66 0.723374
Target:  5'- cGAGGCGC-UCGUCGcGAGCAUCaUCGa -3'
miRNA:   3'- -CUCCGCGuAGUGGCaCUUGUGG-AGCg -5'
12775 5' -55.1 NC_003387.1 + 51592 0.66 0.723374
Target:  5'- cAGGCGCcgagcaCACCGUGcGCccuaGCgUCGCu -3'
miRNA:   3'- cUCCGCGua----GUGGCACuUG----UGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 50020 0.66 0.723374
Target:  5'- ---cCGCGUCGCCGaGcACaACCUCGCc -3'
miRNA:   3'- cuccGCGUAGUGGCaCuUG-UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 10724 0.66 0.723374
Target:  5'- cAGGCgGCccCACCGcuUGAGCACCgcgGCg -3'
miRNA:   3'- cUCCG-CGuaGUGGC--ACUUGUGGag-CG- -5'
12775 5' -55.1 NC_003387.1 + 45144 0.66 0.722305
Target:  5'- cGAGGCGCggCGCucggagguggucgCGUGAgcagGCACCg-GCa -3'
miRNA:   3'- -CUCCGCGuaGUG-------------GCACU----UGUGGagCG- -5'
12775 5' -55.1 NC_003387.1 + 32182 0.66 0.716947
Target:  5'- -cGGCGCA--GCCGacGAACACCgcaggggcaggcgcaUCGCu -3'
miRNA:   3'- cuCCGCGUagUGGCa-CUUGUGG---------------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 25040 0.66 0.712644
Target:  5'- uGGGUGCGUgACCGU---UACC-CGCg -3'
miRNA:   3'- cUCCGCGUAgUGGCAcuuGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 32727 0.66 0.701835
Target:  5'- -cGGCGCA-CGgCGcGGugGCCUCGg -3'
miRNA:   3'- cuCCGCGUaGUgGCaCUugUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 40760 0.66 0.701835
Target:  5'- cGGGCGUcgaGUaCACCGagGuGCGCCUCGa -3'
miRNA:   3'- cUCCGCG---UA-GUGGCa-CuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 51925 0.66 0.701835
Target:  5'- -uGGcCGaCAUCAUCGUGAccCGgCUCGCu -3'
miRNA:   3'- cuCC-GC-GUAGUGGCACUu-GUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 6821 0.66 0.701835
Target:  5'- aAGGCGCGguUCGCCuacgugcuggguGUGAGCGCgacCGCu -3'
miRNA:   3'- cUCCGCGU--AGUGG------------CACUUGUGga-GCG- -5'
12775 5' -55.1 NC_003387.1 + 22442 0.66 0.701835
Target:  5'- cAGGCGCGg-GCCGcGGcguugGCCUCGCg -3'
miRNA:   3'- cUCCGCGUagUGGCaCUug---UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 15809 0.66 0.701835
Target:  5'- cGGGGUGCcgcuGUCGCCGccgguUGuGACGCCgaCGCg -3'
miRNA:   3'- -CUCCGCG----UAGUGGC-----AC-UUGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 31724 0.66 0.701835
Target:  5'- -cGGCGCuGUCGCCGacgaGAGCua-UCGCg -3'
miRNA:   3'- cuCCGCG-UAGUGGCa---CUUGuggAGCG- -5'
12775 5' -55.1 NC_003387.1 + 49574 0.66 0.701835
Target:  5'- cGAGGUGCGcccgCuGCCGggcGGugGCCUgGCa -3'
miRNA:   3'- -CUCCGCGUa---G-UGGCa--CUugUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 15564 0.66 0.690956
Target:  5'- gGAGGUGCA--GCCGauucGCGCCUgGCu -3'
miRNA:   3'- -CUCCGCGUagUGGCacu-UGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 49968 0.66 0.690956
Target:  5'- -cGGgGCGUUugUGUuGACACCUCa- -3'
miRNA:   3'- cuCCgCGUAGugGCAcUUGUGGAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.