miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12776 5' -58 NC_003387.1 + 45928 0.66 0.622346
Target:  5'- gCCGCagGGCGA-CCAuGUCGcgcuCgGCCa -3'
miRNA:   3'- gGGCGagUCGCUaGGU-CAGCu---GgCGG- -5'
12776 5' -58 NC_003387.1 + 12857 0.66 0.622346
Target:  5'- aCCGCacCGGCGggCCuGUCuuuGCCGUCu -3'
miRNA:   3'- gGGCGa-GUCGCuaGGuCAGc--UGGCGG- -5'
12776 5' -58 NC_003387.1 + 10905 0.66 0.622346
Target:  5'- -aUGCUCAGCucgucgauGAUcugCCAGgCGugCGCCa -3'
miRNA:   3'- ggGCGAGUCG--------CUA---GGUCaGCugGCGG- -5'
12776 5' -58 NC_003387.1 + 16044 0.66 0.622346
Target:  5'- gCCCGCggugaacGCGG-CCAgGUCGGCgaGCCg -3'
miRNA:   3'- -GGGCGagu----CGCUaGGU-CAGCUGg-CGG- -5'
12776 5' -58 NC_003387.1 + 49360 0.66 0.622346
Target:  5'- gCCaGCUUGGUGAUgCcGUCGACgaccgCGCCa -3'
miRNA:   3'- gGG-CGAGUCGCUAgGuCAGCUG-----GCGG- -5'
12776 5' -58 NC_003387.1 + 49415 0.66 0.622346
Target:  5'- gCCacaGCaccUCGGCGccCgAGUCGGCgGCCg -3'
miRNA:   3'- -GGg--CG---AGUCGCuaGgUCAGCUGgCGG- -5'
12776 5' -58 NC_003387.1 + 6615 0.66 0.622346
Target:  5'- aCCGCagCAGcCGGaaCAuGUCGGCgGCCg -3'
miRNA:   3'- gGGCGa-GUC-GCUagGU-CAGCUGgCGG- -5'
12776 5' -58 NC_003387.1 + 41024 0.66 0.622346
Target:  5'- aUCGCgaCAGCGAgCCcGaCGACCGCg -3'
miRNA:   3'- gGGCGa-GUCGCUaGGuCaGCUGGCGg -5'
12776 5' -58 NC_003387.1 + 32223 0.66 0.622346
Target:  5'- gCCGCgcugCGcgagcGCGAcgagCUGGcCGACCGCCu -3'
miRNA:   3'- gGGCGa---GU-----CGCUa---GGUCaGCUGGCGG- -5'
12776 5' -58 NC_003387.1 + 12971 0.66 0.621279
Target:  5'- aCCGgUCGGCGAgCUGGUCGucgauaaucucgcGCUGCg -3'
miRNA:   3'- gGGCgAGUCGCUaGGUCAGC-------------UGGCGg -5'
12776 5' -58 NC_003387.1 + 27490 0.66 0.619144
Target:  5'- uUCGCUUucgAGCGGcuguggcgcgaagaUCCGGcCG-CCGCCg -3'
miRNA:   3'- gGGCGAG---UCGCU--------------AGGUCaGCuGGCGG- -5'
12776 5' -58 NC_003387.1 + 45543 0.66 0.611677
Target:  5'- gCCGUgcggcaaGGCGAUCCGccgccagcucGUCGGCacgGCCg -3'
miRNA:   3'- gGGCGag-----UCGCUAGGU----------CAGCUGg--CGG- -5'
12776 5' -58 NC_003387.1 + 13648 0.66 0.611677
Target:  5'- aCCGUcggCGGCGGcUCGGUCGccgagggcGCCGUCg -3'
miRNA:   3'- gGGCGa--GUCGCUaGGUCAGC--------UGGCGG- -5'
12776 5' -58 NC_003387.1 + 31267 0.66 0.611677
Target:  5'- gCUGCgcCAGCGGggccgggUUAGUUGACCaGCCg -3'
miRNA:   3'- gGGCGa-GUCGCUa------GGUCAGCUGG-CGG- -5'
12776 5' -58 NC_003387.1 + 43385 0.66 0.611677
Target:  5'- gCCUGCaCGGCGcccggCUGGUCGugUGCUc -3'
miRNA:   3'- -GGGCGaGUCGCua---GGUCAGCugGCGG- -5'
12776 5' -58 NC_003387.1 + 11102 0.66 0.60848
Target:  5'- gCCGCUC-GCGA-CCGGgcuuaugggcguguUCGAcaagcugaCCGCCg -3'
miRNA:   3'- gGGCGAGuCGCUaGGUC--------------AGCU--------GGCGG- -5'
12776 5' -58 NC_003387.1 + 47156 0.66 0.607414
Target:  5'- gCCaGCUCGGCGGcgucagccuugagCUGGUCGuaAUCGCCg -3'
miRNA:   3'- gGG-CGAGUCGCUa------------GGUCAGC--UGGCGG- -5'
12776 5' -58 NC_003387.1 + 2624 0.66 0.601025
Target:  5'- gCUCGCgggccUCGGCGAUCguGUCGugC-UCg -3'
miRNA:   3'- -GGGCG-----AGUCGCUAGguCAGCugGcGG- -5'
12776 5' -58 NC_003387.1 + 3664 0.66 0.601025
Target:  5'- gCCUGCcCGGUGAgcgCCAGcagCGcaACCGUCg -3'
miRNA:   3'- -GGGCGaGUCGCUa--GGUCa--GC--UGGCGG- -5'
12776 5' -58 NC_003387.1 + 16318 0.66 0.601025
Target:  5'- --aGCUCGGCGccgguGUCgAuGUUGACCGCg -3'
miRNA:   3'- gggCGAGUCGC-----UAGgU-CAGCUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.