miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12777 5' -54.7 NC_003387.1 + 45626 0.65 0.785811
Target:  5'- aGUCGGCGUacggcgaggcgaaGaUCGGCcgccUGGCGCCGa -3'
miRNA:   3'- gCAGUUGCA-------------C-AGCCGca--ACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 30243 0.66 0.776901
Target:  5'- aGUUGGCcggGUcGUCGGgGUcGGCGCCGg -3'
miRNA:   3'- gCAGUUG---CA-CAGCCgCAaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 41442 0.66 0.776901
Target:  5'- gGUCAcCGgcgCGGCccUGACGCCGc -3'
miRNA:   3'- gCAGUuGCacaGCCGcaACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 1465 0.66 0.766861
Target:  5'- uCGUCGAgGUcGUCgagggccagGGCGUcGACGUCGa -3'
miRNA:   3'- -GCAGUUgCA-CAG---------CCGCAaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 17141 0.66 0.766861
Target:  5'- uGUCGACcaGcUCGGCcagGGCGCCGa -3'
miRNA:   3'- gCAGUUGcaC-AGCCGcaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 26792 0.66 0.756683
Target:  5'- cCG-CAGCcaUGUgGGUGUggGGCGCCGUa -3'
miRNA:   3'- -GCaGUUGc-ACAgCCGCAa-CUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 15177 0.66 0.746379
Target:  5'- cCGUCGGCGacgaucgCGGC-UUGAaCGCCGUu -3'
miRNA:   3'- -GCAGUUGCaca----GCCGcAACU-GCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 24222 0.66 0.746379
Target:  5'- gGUUAGCGUcGUCGuG-GUUGcCGCCGa -3'
miRNA:   3'- gCAGUUGCA-CAGC-CgCAACuGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 42140 0.66 0.735961
Target:  5'- uGUgAACGUGgCGGCGgUGGCccGCUGUc -3'
miRNA:   3'- gCAgUUGCACaGCCGCaACUG--CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 4129 0.66 0.733864
Target:  5'- gGUUAGCGgcgggcuuuuggGUCGGCGaggcgGGCGUCGa -3'
miRNA:   3'- gCAGUUGCa-----------CAGCCGCaa---CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 31649 0.66 0.732814
Target:  5'- gCGUCAgcaugcccaagagcACGauauacgCGGCGUUcGACGCCGa -3'
miRNA:   3'- -GCAGU--------------UGCaca----GCCGCAA-CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 35415 0.67 0.725438
Target:  5'- gGUCAGCgGUGUgauUGGCGgauuCGCCGg -3'
miRNA:   3'- gCAGUUG-CACA---GCCGCaacuGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 29860 0.67 0.725438
Target:  5'- uGUCGAUucGUCGGCGagGGCGCUu- -3'
miRNA:   3'- gCAGUUGcaCAGCCGCaaCUGCGGca -5'
12777 5' -54.7 NC_003387.1 + 21798 0.67 0.714824
Target:  5'- cCG-CGGCGgccagcUCGGCGagcGACGCCGUg -3'
miRNA:   3'- -GCaGUUGCac----AGCCGCaa-CUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 51301 0.67 0.714824
Target:  5'- uGcCAGCucGUCGGCGgcGGCGCCu- -3'
miRNA:   3'- gCaGUUGcaCAGCCGCaaCUGCGGca -5'
12777 5' -54.7 NC_003387.1 + 22692 0.67 0.714824
Target:  5'- uGUCGACGg--CGGCGcUGGCgGCCu- -3'
miRNA:   3'- gCAGUUGCacaGCCGCaACUG-CGGca -5'
12777 5' -54.7 NC_003387.1 + 41010 0.67 0.704129
Target:  5'- gCGUCGACGgccggGUCGacuGCGUcGACGgCGa -3'
miRNA:   3'- -GCAGUUGCa----CAGC---CGCAaCUGCgGCa -5'
12777 5' -54.7 NC_003387.1 + 40366 0.67 0.704129
Target:  5'- cCGUC-GCGg--CGGCGUUGGugaugaacuCGCCGUu -3'
miRNA:   3'- -GCAGuUGCacaGCCGCAACU---------GCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 41686 0.67 0.682541
Target:  5'- gCGUCAACccgaccCGGCGUcgcGGCGCCGa -3'
miRNA:   3'- -GCAGUUGcaca--GCCGCAa--CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 11706 0.67 0.682541
Target:  5'- cCGUCGACGcaGUcgaccCGGcCGUcGACGCCGa -3'
miRNA:   3'- -GCAGUUGCa-CA-----GCC-GCAaCUGCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.