miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 5' -63.3 NC_003387.1 + 17557 0.66 0.347789
Target:  5'- -aCCGuUCGCgCGUCaGCCCGC-CCUcGCu -3'
miRNA:   3'- acGGC-AGCG-GCAGcCGGGUGcGGA-CG- -5'
12795 5' -63.3 NC_003387.1 + 27983 0.66 0.347789
Target:  5'- gUGCCGUUGCgGcgcccucgauuUCGGCgagcaCGCGCUUGg -3'
miRNA:   3'- -ACGGCAGCGgC-----------AGCCGg----GUGCGGACg -5'
12795 5' -63.3 NC_003387.1 + 15489 0.66 0.347789
Target:  5'- aGCuCGUCGaaauCGUC-GCCCACGgCgGCg -3'
miRNA:   3'- aCG-GCAGCg---GCAGcCGGGUGCgGaCG- -5'
12795 5' -63.3 NC_003387.1 + 47841 0.66 0.347789
Target:  5'- aGCCGuucgUCGCCGccUCGGCCUuccagaaCUGCu -3'
miRNA:   3'- aCGGC----AGCGGC--AGCCGGGugcg---GACG- -5'
12795 5' -63.3 NC_003387.1 + 25194 0.66 0.347789
Target:  5'- cGCCGcCGCCG-CGGCa-GCGCaucauggUGCu -3'
miRNA:   3'- aCGGCaGCGGCaGCCGggUGCGg------ACG- -5'
12795 5' -63.3 NC_003387.1 + 46351 0.66 0.347789
Target:  5'- aGgCGUCGcCCG-CGGCCgAgGCCaaGCg -3'
miRNA:   3'- aCgGCAGC-GGCaGCCGGgUgCGGa-CG- -5'
12795 5' -63.3 NC_003387.1 + 48825 0.66 0.347789
Target:  5'- cGCCGgucgUGCUGcUCGGCgCgACGCacgGCg -3'
miRNA:   3'- aCGGCa---GCGGC-AGCCG-GgUGCGga-CG- -5'
12795 5' -63.3 NC_003387.1 + 1067 0.66 0.346999
Target:  5'- gGCCGU-GCUGUuuaagaaCGGCUCGCGCaucCUGUu -3'
miRNA:   3'- aCGGCAgCGGCA-------GCCGGGUGCG---GACG- -5'
12795 5' -63.3 NC_003387.1 + 45562 0.66 0.339948
Target:  5'- cGCCGcCaGCuCGUCGGCacggccgaggagCCGgGCCUcGCg -3'
miRNA:   3'- aCGGCaG-CG-GCAGCCG------------GGUgCGGA-CG- -5'
12795 5' -63.3 NC_003387.1 + 12367 0.66 0.339948
Target:  5'- cGCCGcCG-CGaCGGCCCGCaaUCUGCc -3'
miRNA:   3'- aCGGCaGCgGCaGCCGGGUGc-GGACG- -5'
12795 5' -63.3 NC_003387.1 + 28123 0.66 0.339948
Target:  5'- cGCUGaUCGCCGa-GGCCCgcaaGCGCCc-- -3'
miRNA:   3'- aCGGC-AGCGGCagCCGGG----UGCGGacg -5'
12795 5' -63.3 NC_003387.1 + 18331 0.66 0.339948
Target:  5'- cGgCGUgGCCGUCGuGCCCGCcgGUCa-- -3'
miRNA:   3'- aCgGCAgCGGCAGC-CGGGUG--CGGacg -5'
12795 5' -63.3 NC_003387.1 + 37081 0.66 0.339948
Target:  5'- cGCCGacauggucgaccUCGCCGUgCGcGCCCuCGaCgUGCu -3'
miRNA:   3'- aCGGC------------AGCGGCA-GC-CGGGuGC-GgACG- -5'
12795 5' -63.3 NC_003387.1 + 5325 0.66 0.339948
Target:  5'- gGgCGggGCCgGUUGcCCCGCGCUUGCg -3'
miRNA:   3'- aCgGCagCGG-CAGCcGGGUGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 1487 0.66 0.339948
Target:  5'- gGgCGUCGaCGUCGaGCaCCAgGCCgcgGCc -3'
miRNA:   3'- aCgGCAGCgGCAGC-CG-GGUgCGGa--CG- -5'
12795 5' -63.3 NC_003387.1 + 39875 0.66 0.339948
Target:  5'- gGCC--CGCCGgugCGGUguCCACGCC-GCc -3'
miRNA:   3'- aCGGcaGCGGCa--GCCG--GGUGCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 50971 0.66 0.339948
Target:  5'- cGCCGcCGCCG--GGCUCAUGCUg-- -3'
miRNA:   3'- aCGGCaGCGGCagCCGGGUGCGGacg -5'
12795 5' -63.3 NC_003387.1 + 51043 0.66 0.339948
Target:  5'- cGCCGcCGCgGUgucgguacCGGCCCACaCCUc- -3'
miRNA:   3'- aCGGCaGCGgCA--------GCCGGGUGcGGAcg -5'
12795 5' -63.3 NC_003387.1 + 37654 0.66 0.332235
Target:  5'- aG-CGUCGCCGUCacgaCCACGCCauccgguaauacUGCg -3'
miRNA:   3'- aCgGCAGCGGCAGccg-GGUGCGG------------ACG- -5'
12795 5' -63.3 NC_003387.1 + 4237 0.66 0.332235
Target:  5'- -aUCGUUG-CGUCGGCgCCgcacaACGUCUGCg -3'
miRNA:   3'- acGGCAGCgGCAGCCG-GG-----UGCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.