miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12833 3' -55.2 NC_003387.1 + 13416 0.66 0.735875
Target:  5'- cGCCCucgccguuGUCGGC-CGggGGCuuGCCgUCGUc -3'
miRNA:   3'- -UGGG--------CAGUUGuGCuuUCG--CGGgAGCG- -5'
12833 3' -55.2 NC_003387.1 + 7565 0.66 0.735875
Target:  5'- uGCCUGcUC-ACGCGAccaccuccGAGCGCCg-CGCc -3'
miRNA:   3'- -UGGGC-AGuUGUGCU--------UUCGCGGgaGCG- -5'
12833 3' -55.2 NC_003387.1 + 24014 0.66 0.735875
Target:  5'- cCCCGUCGA-GCGAGAuuGCGuuucaCCCgUCGCu -3'
miRNA:   3'- uGGGCAGUUgUGCUUU--CGC-----GGG-AGCG- -5'
12833 3' -55.2 NC_003387.1 + 52011 0.66 0.734823
Target:  5'- gACCUGUCGGCccucgacgacgagGCGAucAAG-GCCCUgCGUa -3'
miRNA:   3'- -UGGGCAGUUG-------------UGCU--UUCgCGGGA-GCG- -5'
12833 3' -55.2 NC_003387.1 + 44610 0.66 0.734823
Target:  5'- gACgCCGUCGggccgugGCGCGAgcGUgugGCCCUgGCc -3'
miRNA:   3'- -UG-GGCAGU-------UGUGCUuuCG---CGGGAgCG- -5'
12833 3' -55.2 NC_003387.1 + 14912 0.66 0.729547
Target:  5'- gGCCCGaucgcgcgcugcugCGAcCGCGGGugcuGCGCCCaggCGCg -3'
miRNA:   3'- -UGGGCa-------------GUU-GUGCUUu---CGCGGGa--GCG- -5'
12833 3' -55.2 NC_003387.1 + 17007 0.66 0.725308
Target:  5'- cCCCGagcgggcgcuaaUCAAacCGCGgcGGCugccGCCCUCGCc -3'
miRNA:   3'- uGGGC------------AGUU--GUGCuuUCG----CGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 45759 0.66 0.725308
Target:  5'- gUCCGagGGCGCGcuguGGCGCCUgccCGCc -3'
miRNA:   3'- uGGGCagUUGUGCuu--UCGCGGGa--GCG- -5'
12833 3' -55.2 NC_003387.1 + 51524 0.66 0.725308
Target:  5'- cCCCGUCGACggccacccuuGCcccuGCGCCCgcCGCu -3'
miRNA:   3'- uGGGCAGUUG----------UGcuuuCGCGGGa-GCG- -5'
12833 3' -55.2 NC_003387.1 + 11592 0.66 0.725308
Target:  5'- -gCCGUCGGCGCGcugccacuuGAuccggucgugcAGCGCCagcagCUCGCg -3'
miRNA:   3'- ugGGCAGUUGUGC---------UU-----------UCGCGG-----GAGCG- -5'
12833 3' -55.2 NC_003387.1 + 31110 0.66 0.725308
Target:  5'- uGCCCGaUCAuguGCACcAGcAGCGCcgcgucggCCUCGCu -3'
miRNA:   3'- -UGGGC-AGU---UGUGcUU-UCGCG--------GGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 50538 0.66 0.725308
Target:  5'- cGCCacauGUCGGCgACcAAGGCGCCgagcugCUCGCg -3'
miRNA:   3'- -UGGg---CAGUUG-UGcUUUCGCGG------GAGCG- -5'
12833 3' -55.2 NC_003387.1 + 2355 0.66 0.725308
Target:  5'- -gCCGUCGGCGuCGA--GCGCCaCguaCGCg -3'
miRNA:   3'- ugGGCAGUUGU-GCUuuCGCGG-Ga--GCG- -5'
12833 3' -55.2 NC_003387.1 + 9389 0.66 0.725308
Target:  5'- gGCCCGcgAGCAgGAAAuUGCCCggCGCu -3'
miRNA:   3'- -UGGGCagUUGUgCUUUcGCGGGa-GCG- -5'
12833 3' -55.2 NC_003387.1 + 47576 0.66 0.725308
Target:  5'- uGCaCCGacCGGCGCc-GAGCGCCCcucgUCGCg -3'
miRNA:   3'- -UG-GGCa-GUUGUGcuUUCGCGGG----AGCG- -5'
12833 3' -55.2 NC_003387.1 + 32528 0.66 0.724245
Target:  5'- cGCCCGgccgugCGAgGCGcAGcagcgcaucaaccGCGCCCUCGa -3'
miRNA:   3'- -UGGGCa-----GUUgUGCuUU-------------CGCGGGAGCg -5'
12833 3' -55.2 NC_003387.1 + 3491 0.66 0.724245
Target:  5'- cGCuuGUCGACaaacugcugucgaACGAAccggcgccAGUGCCCcCGCc -3'
miRNA:   3'- -UGggCAGUUG-------------UGCUU--------UCGCGGGaGCG- -5'
12833 3' -55.2 NC_003387.1 + 4650 0.66 0.714647
Target:  5'- cACCCGUCGAgGCGcuucGGGGCGCgguaGCg -3'
miRNA:   3'- -UGGGCAGUUgUGC----UUUCGCGggagCG- -5'
12833 3' -55.2 NC_003387.1 + 39163 0.66 0.714647
Target:  5'- uGCCCGUCGAU-CG--GGCuGCCCagGCc -3'
miRNA:   3'- -UGGGCAGUUGuGCuuUCG-CGGGagCG- -5'
12833 3' -55.2 NC_003387.1 + 9015 0.66 0.714647
Target:  5'- -gCCGUCGAgcacCugGcgGGCGCCgUCGg -3'
miRNA:   3'- ugGGCAGUU----GugCuuUCGCGGgAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.