miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12844 3' -59.5 NC_003387.1 + 46957 0.66 0.521068
Target:  5'- aCGCCAgGCGau-CAGCuCGUCGGCcgaGGCg -3'
miRNA:   3'- gGCGGU-CGUaccGUUG-GCAGCCG---CCG- -5'
12844 3' -59.5 NC_003387.1 + 42259 0.66 0.521068
Target:  5'- aUCGCCAuGCcaccGGCGACCGaCaGCGcGCu -3'
miRNA:   3'- -GGCGGU-CGua--CCGUUGGCaGcCGC-CG- -5'
12844 3' -59.5 NC_003387.1 + 14191 0.66 0.521068
Target:  5'- gCGCCAcCAUGaC-GCCGUCGGC-GCu -3'
miRNA:   3'- gGCGGUcGUACcGuUGGCAGCCGcCG- -5'
12844 3' -59.5 NC_003387.1 + 6419 0.66 0.521068
Target:  5'- gCCGCgGugacuGCG-GGCcaGGCCGUCgaggucgugGGCGGCg -3'
miRNA:   3'- -GGCGgU-----CGUaCCG--UUGGCAG---------CCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 49163 0.66 0.521068
Target:  5'- aCaCCAGCGcgcaGGCggUCGcgcaggCGGCGGCc -3'
miRNA:   3'- gGcGGUCGUa---CCGuuGGCa-----GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 37431 0.66 0.520046
Target:  5'- gUCGCCGGUgccggugucGUgcaacaucuccucGGCGucgACCGacuucUCGGCGGCg -3'
miRNA:   3'- -GGCGGUCG---------UA-------------CCGU---UGGC-----AGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 41375 0.66 0.51495
Target:  5'- aCGCCGagcgugaggccgagcGCcgGGCGACCGa-GGCGcaGCa -3'
miRNA:   3'- gGCGGU---------------CGuaCCGUUGGCagCCGC--CG- -5'
12844 3' -59.5 NC_003387.1 + 46706 0.66 0.510888
Target:  5'- -aGCCucuuggaugAGCGaGGCGACC-UCGGCGcGUg -3'
miRNA:   3'- ggCGG---------UCGUaCCGUUGGcAGCCGC-CG- -5'
12844 3' -59.5 NC_003387.1 + 617 0.66 0.510888
Target:  5'- -gGCCgAGCAgggcgagGGCAG-CGUCGccgccGCGGCa -3'
miRNA:   3'- ggCGG-UCGUa------CCGUUgGCAGC-----CGCCG- -5'
12844 3' -59.5 NC_003387.1 + 7138 0.66 0.510888
Target:  5'- -aGCCAcGCGaGGCccggcuccucGGCCGUgccgacgagcUGGCGGCg -3'
miRNA:   3'- ggCGGU-CGUaCCG----------UUGGCA----------GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 3550 0.66 0.510888
Target:  5'- gCCGCC-GCcUGcGCGACCGcCuGCGcGCu -3'
miRNA:   3'- -GGCGGuCGuAC-CGUUGGCaGcCGC-CG- -5'
12844 3' -59.5 NC_003387.1 + 32729 0.66 0.510888
Target:  5'- gCGCaCGGCGcGGUGGCC-UCGGCGa- -3'
miRNA:   3'- gGCG-GUCGUaCCGUUGGcAGCCGCcg -5'
12844 3' -59.5 NC_003387.1 + 32604 0.66 0.500792
Target:  5'- gUGUCGGUGUuGguGCCGUCGGUguaccuGGCg -3'
miRNA:   3'- gGCGGUCGUAcCguUGGCAGCCG------CCG- -5'
12844 3' -59.5 NC_003387.1 + 2902 0.66 0.500792
Target:  5'- cUCGCCgGGCGcGGCAgGCCG-CGGgcgaGGCu -3'
miRNA:   3'- -GGCGG-UCGUaCCGU-UGGCaGCCg---CCG- -5'
12844 3' -59.5 NC_003387.1 + 45441 0.66 0.500792
Target:  5'- aCCGCCgGGCGUGaacgucacGCcgaacCCGUCaGCGGUg -3'
miRNA:   3'- -GGCGG-UCGUAC--------CGuu---GGCAGcCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 20265 0.66 0.499787
Target:  5'- aCGCCcGCAUGGCGcuaggcacugcggGCCGaUCuGGC-GCu -3'
miRNA:   3'- gGCGGuCGUACCGU-------------UGGC-AG-CCGcCG- -5'
12844 3' -59.5 NC_003387.1 + 10687 0.66 0.498783
Target:  5'- gCCGCCucGGCgGUGGCcGCCGguaucaagccgGGCGaGCa -3'
miRNA:   3'- -GGCGG--UCG-UACCGuUGGCag---------CCGC-CG- -5'
12844 3' -59.5 NC_003387.1 + 35081 0.66 0.49778
Target:  5'- uUGUCGGUcgGGCcgaggcucGCCuucaacgguucgagGUCGGCGGCc -3'
miRNA:   3'- gGCGGUCGuaCCGu-------UGG--------------CAGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 20509 0.66 0.494776
Target:  5'- cUCGCgCAGCGcGGCGucgcGCuCGUCGGUgacgacgcgcagcucGGCg -3'
miRNA:   3'- -GGCG-GUCGUaCCGU----UG-GCAGCCG---------------CCG- -5'
12844 3' -59.5 NC_003387.1 + 31362 0.66 0.490784
Target:  5'- gCaCCGGCcagGGCAG-CGUCGGCuGCa -3'
miRNA:   3'- gGcGGUCGua-CCGUUgGCAGCCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.