miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 3' -55.4 NC_003387.1 + 51368 0.66 0.741215
Target:  5'- cGGUCGuCGG-GgUCGGCGUcCuCGuCGGCg -3'
miRNA:   3'- -CCAGC-GUCaCgAGCUGCAuG-GC-GUCG- -5'
12852 3' -55.4 NC_003387.1 + 23882 0.66 0.741215
Target:  5'- --cCGguGUgGCUggcCGACGUGCUGCGcGCc -3'
miRNA:   3'- ccaGCguCA-CGA---GCUGCAUGGCGU-CG- -5'
12852 3' -55.4 NC_003387.1 + 46659 0.66 0.741215
Target:  5'- cGGUCGUcauGGUgcGCUCGAaccUGCC-CGGCg -3'
miRNA:   3'- -CCAGCG---UCA--CGAGCUgc-AUGGcGUCG- -5'
12852 3' -55.4 NC_003387.1 + 23028 0.66 0.741215
Target:  5'- --aCGCAGcaGUUCaACGUGCCcgGCGGCg -3'
miRNA:   3'- ccaGCGUCa-CGAGcUGCAUGG--CGUCG- -5'
12852 3' -55.4 NC_003387.1 + 6675 0.66 0.739133
Target:  5'- cGGUgcgcUGCAGauccucgacgacGCUCGGCGUcuugcACCGCGGg -3'
miRNA:   3'- -CCA----GCGUCa-----------CGAGCUGCA-----UGGCGUCg -5'
12852 3' -55.4 NC_003387.1 + 31724 0.66 0.730766
Target:  5'- cGG-CGCuGUcGC-CGACGagagcUAUCGCGGCa -3'
miRNA:   3'- -CCaGCGuCA-CGaGCUGC-----AUGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 19443 0.66 0.730766
Target:  5'- cGUCGuCGGUGUcggggaUCGGCGgcagGCCG-GGCa -3'
miRNA:   3'- cCAGC-GUCACG------AGCUGCa---UGGCgUCG- -5'
12852 3' -55.4 NC_003387.1 + 14528 0.66 0.730766
Target:  5'- --gUGCGGUaCUCGGCGgccggGCCGUuGCg -3'
miRNA:   3'- ccaGCGUCAcGAGCUGCa----UGGCGuCG- -5'
12852 3' -55.4 NC_003387.1 + 15026 0.66 0.729715
Target:  5'- --cCGCAGgGCUCaaucACGUgcaucauGCCGCAGUa -3'
miRNA:   3'- ccaGCGUCaCGAGc---UGCA-------UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 17080 0.66 0.729715
Target:  5'- aGGUCGgcCAGUGCccgcccggccgccUCGGCGggcuccucgggGCCGUAGg -3'
miRNA:   3'- -CCAGC--GUCACG-------------AGCUGCa----------UGGCGUCg -5'
12852 3' -55.4 NC_003387.1 + 44038 0.66 0.720219
Target:  5'- cGGUCgGCAG----CGGCGUGCCGaaCGGCg -3'
miRNA:   3'- -CCAG-CGUCacgaGCUGCAUGGC--GUCG- -5'
12852 3' -55.4 NC_003387.1 + 34000 0.66 0.720219
Target:  5'- --cCGC--UGCUCGACGagUGCCGCgcccuGGCg -3'
miRNA:   3'- ccaGCGucACGAGCUGC--AUGGCG-----UCG- -5'
12852 3' -55.4 NC_003387.1 + 4081 0.66 0.720219
Target:  5'- gGGUucugcCGCA-UGCUCG-CGacCCGCGGCg -3'
miRNA:   3'- -CCA-----GCGUcACGAGCuGCauGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 41024 0.66 0.720219
Target:  5'- -aUCGCGacaGCgagccCGACG-ACCGCGGCg -3'
miRNA:   3'- ccAGCGUca-CGa----GCUGCaUGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 18197 0.66 0.709586
Target:  5'- gGGUCGaCGGgcaGCcCGAgG-AUCGCGGCg -3'
miRNA:   3'- -CCAGC-GUCa--CGaGCUgCaUGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 21798 0.66 0.709586
Target:  5'- --cCGCGGcggccaGCUCGGCGagcgacGCCGUGGCg -3'
miRNA:   3'- ccaGCGUCa-----CGAGCUGCa-----UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 44205 0.66 0.709586
Target:  5'- ---gGCAGUGCUgGGUGUAacCCGUAGUg -3'
miRNA:   3'- ccagCGUCACGAgCUGCAU--GGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 24510 0.66 0.709586
Target:  5'- cGUCGCGGcugcGCUUGcCGaGCUGCAGg -3'
miRNA:   3'- cCAGCGUCa---CGAGCuGCaUGGCGUCg -5'
12852 3' -55.4 NC_003387.1 + 4004 0.66 0.708518
Target:  5'- cGUCGCggcgcacGGUGCUCGACaa--CGCcaAGCg -3'
miRNA:   3'- cCAGCG-------UCACGAGCUGcaugGCG--UCG- -5'
12852 3' -55.4 NC_003387.1 + 46171 0.66 0.698878
Target:  5'- uGGUgCGCcGUgucccgGCUCGcAUGUAuCUGCAGCg -3'
miRNA:   3'- -CCA-GCGuCA------CGAGC-UGCAU-GGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.