miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 5' -60.9 NC_003387.1 + 48777 0.66 0.432861
Target:  5'- -cGCGAccaCCGGGUcguUCUGCAGCAgCGCc -3'
miRNA:   3'- caUGCUc--GGCCCGu--GGGCGUCGU-GCG- -5'
12853 5' -60.9 NC_003387.1 + 22726 0.66 0.432861
Target:  5'- -gACcAGUCGGGCguACUCGCGGU-CGCu -3'
miRNA:   3'- caUGcUCGGCCCG--UGGGCGUCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 21487 0.66 0.432861
Target:  5'- gGU-CGGGCCGGGCugguucgugUCGCuGCACGa -3'
miRNA:   3'- -CAuGCUCGGCCCGug-------GGCGuCGUGCg -5'
12853 5' -60.9 NC_003387.1 + 5515 0.66 0.432861
Target:  5'- --uCGAGCaGcGGCucGCCCGCgAGCGgGCg -3'
miRNA:   3'- cauGCUCGgC-CCG--UGGGCG-UCGUgCG- -5'
12853 5' -60.9 NC_003387.1 + 1757 0.66 0.432861
Target:  5'- -cAUGAGCCcGGCGgCgGC-GCugGCg -3'
miRNA:   3'- caUGCUCGGcCCGUgGgCGuCGugCG- -5'
12853 5' -60.9 NC_003387.1 + 34554 0.66 0.431929
Target:  5'- -gACGAcgucguguauaucGCCGGGCcgaugacggguuACCCGCGGUggaACGa -3'
miRNA:   3'- caUGCU-------------CGGCCCG------------UGGGCGUCG---UGCg -5'
12853 5' -60.9 NC_003387.1 + 14686 0.66 0.423597
Target:  5'- cGUGgGAGUCGuGGCcgaaguuCCUGguGCGCGg -3'
miRNA:   3'- -CAUgCUCGGC-CCGu------GGGCguCGUGCg -5'
12853 5' -60.9 NC_003387.1 + 41706 0.66 0.423597
Target:  5'- -cGCGGcGCCGacgaaGGCGgCCGgGGCACGg -3'
miRNA:   3'- caUGCU-CGGC-----CCGUgGGCgUCGUGCg -5'
12853 5' -60.9 NC_003387.1 + 483 0.66 0.423597
Target:  5'- -cGCGAGCUGcucgucgcgauGcGCGCCCGCguGGCGacCGCg -3'
miRNA:   3'- caUGCUCGGC-----------C-CGUGGGCG--UCGU--GCG- -5'
12853 5' -60.9 NC_003387.1 + 50768 0.66 0.423597
Target:  5'- -gGCGcuGCCcGGCcagACCCGCGGCcggaucauGCGCu -3'
miRNA:   3'- caUGCu-CGGcCCG---UGGGCGUCG--------UGCG- -5'
12853 5' -60.9 NC_003387.1 + 10925 0.66 0.423597
Target:  5'- cUGCcAGgCGuGCGCCagguCGCGGCACGCg -3'
miRNA:   3'- cAUGcUCgGCcCGUGG----GCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 3659 0.66 0.423597
Target:  5'- -cGCGAGCCugcccGGugaGCGCCaGCAGCGCa- -3'
miRNA:   3'- caUGCUCGG-----CC---CGUGGgCGUCGUGcg -5'
12853 5' -60.9 NC_003387.1 + 31275 0.66 0.423597
Target:  5'- -aGCgGGGCCGGGUuaguugaccAgCCGUAGCugcuGCGCc -3'
miRNA:   3'- caUG-CUCGGCCCG---------UgGGCGUCG----UGCG- -5'
12853 5' -60.9 NC_003387.1 + 38600 0.66 0.422677
Target:  5'- -aGCGuGCCGGugaucgaggcgcuGUucgGCCCGCAGgcCGCGCu -3'
miRNA:   3'- caUGCuCGGCC-------------CG---UGGGCGUC--GUGCG- -5'
12853 5' -60.9 NC_003387.1 + 46122 0.66 0.422677
Target:  5'- -aACGAGucgucgcggaacaCCGGGUugCCGUucGCGuCGCg -3'
miRNA:   3'- caUGCUC-------------GGCCCGugGGCGu-CGU-GCG- -5'
12853 5' -60.9 NC_003387.1 + 26071 0.66 0.420841
Target:  5'- -cGCGAGgCu-GCGCCCGgcgugacguauuucCAGCACGCg -3'
miRNA:   3'- caUGCUCgGccCGUGGGC--------------GUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 48411 0.66 0.418095
Target:  5'- -gGCGuugagccacuGCCGGGUcgcggugcgcugcucGCCCGCGGCcuccauCGCc -3'
miRNA:   3'- caUGCu---------CGGCCCG---------------UGGGCGUCGu-----GCG- -5'
12853 5' -60.9 NC_003387.1 + 37045 0.66 0.414452
Target:  5'- -cACGcGCCGGGauucauCACCUGCgugGGCAaCGCc -3'
miRNA:   3'- caUGCuCGGCCC------GUGGGCG---UCGU-GCG- -5'
12853 5' -60.9 NC_003387.1 + 38087 0.66 0.414452
Target:  5'- uGUGCGcggcGGCCugacGGGCACCUGCGaccuuuacGaCACGUg -3'
miRNA:   3'- -CAUGC----UCGG----CCCGUGGGCGU--------C-GUGCG- -5'
12853 5' -60.9 NC_003387.1 + 4424 0.66 0.414452
Target:  5'- --cCGAGCUGGGCAaggcgUUCGCcgAGCcCGCg -3'
miRNA:   3'- cauGCUCGGCCCGU-----GGGCG--UCGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.