miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12865 5' -60.4 NC_003387.1 + 44384 0.66 0.466744
Target:  5'- cGGCaCGUcgGGGUCGUcgaggUCGGCCgGGCCGu -3'
miRNA:   3'- cUUG-GCG--CUCAGCG-----AGCUGGgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 42058 0.66 0.466744
Target:  5'- cGACCGCGGcgUGUaCGACCUGGCg- -3'
miRNA:   3'- cUUGGCGCUcaGCGaGCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 51228 0.66 0.466744
Target:  5'- cGGCCGCGGccuggUGCUCGAcgucgacgcCCUGGCCc -3'
miRNA:   3'- cUUGGCGCUca---GCGAGCU---------GGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 11329 0.66 0.466744
Target:  5'- -uGCUGCGccucGGUCGCcCGgcGCUCGGCCu -3'
miRNA:   3'- cuUGGCGC----UCAGCGaGC--UGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 12552 0.66 0.466744
Target:  5'- -uGCUGCGAGg-GCUCGACgacgauCgGGCCGc -3'
miRNA:   3'- cuUGGCGCUCagCGAGCUG------GgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 13668 0.66 0.466744
Target:  5'- cAACCGUgaguaagcacGAGUCG-UCGACC-GGCCGc -3'
miRNA:   3'- cUUGGCG----------CUCAGCgAGCUGGgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 15583 0.66 0.466744
Target:  5'- -cGCCcaGCGAGU-GCccaaccaucaCGGCCCGGCCGa -3'
miRNA:   3'- cuUGG--CGCUCAgCGa---------GCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 29563 0.66 0.457099
Target:  5'- cGAGgUGUGGGU-GCUCGACUucgaGGCCGa -3'
miRNA:   3'- -CUUgGCGCUCAgCGAGCUGGg---CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 45190 0.66 0.457099
Target:  5'- aGGAUCGgGuGUUGCccggcccguUCGACCCgcGGCCGa -3'
miRNA:   3'- -CUUGGCgCuCAGCG---------AGCUGGG--CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 30659 0.66 0.457099
Target:  5'- aGAGCCaaCGAGaaaCGCcccCGACCCGGUCGc -3'
miRNA:   3'- -CUUGGc-GCUCa--GCGa--GCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 27954 0.66 0.457099
Target:  5'- cGGGgCGCucGgcgUGCUCGGCuuGGCCGg -3'
miRNA:   3'- -CUUgGCGcuCa--GCGAGCUGggCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 31348 0.66 0.457099
Target:  5'- ---gCGCGGGUCGaaCaGCaCCGGCCAg -3'
miRNA:   3'- cuugGCGCUCAGCgaGcUG-GGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 13159 0.66 0.45614
Target:  5'- -cACCGCGugcagaaGGcCGagcgCGACCUGGCCGa -3'
miRNA:   3'- cuUGGCGC-------UCaGCga--GCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 5784 0.66 0.447561
Target:  5'- -cGCCGCGGaUCGacacCUCGguGCCCGGCuCAa -3'
miRNA:   3'- cuUGGCGCUcAGC----GAGC--UGGGCCG-GU- -5'
12865 5' -60.4 NC_003387.1 + 47840 0.66 0.447561
Target:  5'- uAGCCGUucGUCGC-CGcCUCGGCCu -3'
miRNA:   3'- cUUGGCGcuCAGCGaGCuGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 37806 0.66 0.447561
Target:  5'- --cCCGCG-GUCGCagcagcgcgCGAUCgGGCCGa -3'
miRNA:   3'- cuuGGCGCuCAGCGa--------GCUGGgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 40426 0.66 0.438134
Target:  5'- cGACgGCGAaccgGCcCGGCCCGGCCu -3'
miRNA:   3'- cUUGgCGCUcag-CGaGCUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 1933 0.66 0.438134
Target:  5'- cGAUCGUGcAG-CGCaUGAUCCGGCCGc -3'
miRNA:   3'- cUUGGCGC-UCaGCGaGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 12343 0.66 0.438134
Target:  5'- -cGCCGcCGAcGUCGaggccCUUGGCCCcGGCCGc -3'
miRNA:   3'- cuUGGC-GCU-CAGC-----GAGCUGGG-CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 42470 0.66 0.438134
Target:  5'- cGACCuuGAGcccgCGCUCGGCgCGGCUc -3'
miRNA:   3'- cUUGGcgCUCa---GCGAGCUGgGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.