miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 5' -61.2 NC_003387.1 + 32548 0.66 0.43526
Target:  5'- cGGCGCCG----UCCGGUgGCGaGCCGa -3'
miRNA:   3'- -CCGCGGCugcuAGGCCGaCGCgUGGU- -5'
12870 5' -61.2 NC_003387.1 + 6304 0.66 0.43526
Target:  5'- cGUGCUGAcCGAggucgCCGaGCUGgGCgGCCAg -3'
miRNA:   3'- cCGCGGCU-GCUa----GGC-CGACgCG-UGGU- -5'
12870 5' -61.2 NC_003387.1 + 28411 0.66 0.43526
Target:  5'- -uCGCCGAgcaGAcCCGGCUGCuGCGgCGg -3'
miRNA:   3'- ccGCGGCUg--CUaGGCCGACG-CGUgGU- -5'
12870 5' -61.2 NC_003387.1 + 38638 0.66 0.43526
Target:  5'- cGCGCUGGCGcugcaguUCCGGCgcaucaaucCGCACUg -3'
miRNA:   3'- cCGCGGCUGCu------AGGCCGac-------GCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 17356 0.66 0.43526
Target:  5'- aGGCGaCGGCGAUCaGGUgcgGCGaGCCu -3'
miRNA:   3'- -CCGCgGCUGCUAGgCCGa--CGCgUGGu -5'
12870 5' -61.2 NC_003387.1 + 9032 0.66 0.43526
Target:  5'- gGGCGCCGucgGCGAUCCacgccaGGaucGCGuCGCCc -3'
miRNA:   3'- -CCGCGGC---UGCUAGG------CCga-CGC-GUGGu -5'
12870 5' -61.2 NC_003387.1 + 25212 0.66 0.43526
Target:  5'- cGCGgCGGCGG-CCGGaucuuCGCGCCAc -3'
miRNA:   3'- cCGCgGCUGCUaGGCCgac--GCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 16982 0.66 0.426041
Target:  5'- uGGCGCgGGCG----GGCUGCGuCAUCGa -3'
miRNA:   3'- -CCGCGgCUGCuaggCCGACGC-GUGGU- -5'
12870 5' -61.2 NC_003387.1 + 900 0.66 0.426041
Target:  5'- cGGCGCgcuCGuGUUCGcGCUGUGCAUCAa -3'
miRNA:   3'- -CCGCGgcuGC-UAGGC-CGACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 27567 0.66 0.426041
Target:  5'- gGGcCGCUGAcacgagcccCGAU-CGGCUGCGCgguguGCCGc -3'
miRNA:   3'- -CC-GCGGCU---------GCUAgGCCGACGCG-----UGGU- -5'
12870 5' -61.2 NC_003387.1 + 12364 0.66 0.426041
Target:  5'- uGGCcccgGCCG-CGAUCaCGGCcUGCuGCACg- -3'
miRNA:   3'- -CCG----CGGCuGCUAG-GCCG-ACG-CGUGgu -5'
12870 5' -61.2 NC_003387.1 + 36900 0.66 0.426041
Target:  5'- cGCGUCGGCGucacaaCCGGCggcgacGCgGCACCc -3'
miRNA:   3'- cCGCGGCUGCua----GGCCGa-----CG-CGUGGu -5'
12870 5' -61.2 NC_003387.1 + 7817 0.66 0.426041
Target:  5'- cGGCGaCG-CGAUaCGGauaUGCGCGCCc -3'
miRNA:   3'- -CCGCgGCuGCUAgGCCg--ACGCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 19948 0.66 0.426041
Target:  5'- cGGCGguacgCGGCGGg-UGGUUGCGCAUCGa -3'
miRNA:   3'- -CCGCg----GCUGCUagGCCGACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 52604 0.66 0.426041
Target:  5'- gGGCGaCCGcauCGAggCgGGC-GCGCAUCAg -3'
miRNA:   3'- -CCGC-GGCu--GCUa-GgCCGaCGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 10019 0.66 0.426041
Target:  5'- gGGCGaCGACGAcgaCGaGCcgaaGCGCGCCGa -3'
miRNA:   3'- -CCGCgGCUGCUag-GC-CGa---CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 12939 0.66 0.420566
Target:  5'- cGGCGCucggcagugccacguCGGCG-UCUGGCgGCuGUACCGg -3'
miRNA:   3'- -CCGCG---------------GCUGCuAGGCCGaCG-CGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 11063 0.66 0.416939
Target:  5'- cGGCGCCGAgguuauggggcCGAUCUuuaagGGC-GUGCAgCCGc -3'
miRNA:   3'- -CCGCGGCU-----------GCUAGG-----CCGaCGCGU-GGU- -5'
12870 5' -61.2 NC_003387.1 + 32182 0.66 0.416939
Target:  5'- cGGCgcaGCCGACGAacaCCgcaggGGCagGCGCAUCGc -3'
miRNA:   3'- -CCG---CGGCUGCUa--GG-----CCGa-CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 18296 0.66 0.416939
Target:  5'- aGCGCCGAccCGGcCgCGGCggugGCGC-CCGg -3'
miRNA:   3'- cCGCGGCU--GCUaG-GCCGa---CGCGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.