miRNA display CGI


Results 1 - 20 of 175 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12876 5' -52.8 NC_003387.1 + 37752 0.66 0.850082
Target:  5'- gUGCGCGGCGGGaucuugccguCGAAAcCGauaCCaCCGGg -3'
miRNA:   3'- -ACGUGUCGUUU----------GCUUUuGCg--GG-GGCC- -5'
12876 5' -52.8 NC_003387.1 + 34138 0.66 0.850082
Target:  5'- gUGCGCgaacucgacgAGCAccagGGCGu---CGCCCUCGGc -3'
miRNA:   3'- -ACGUG----------UCGU----UUGCuuuuGCGGGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 22268 0.66 0.850082
Target:  5'- gUGCACAGCAG-----GGCGCCgugCUCGGc -3'
miRNA:   3'- -ACGUGUCGUUugcuuUUGCGG---GGGCC- -5'
12876 5' -52.8 NC_003387.1 + 15793 0.66 0.850082
Target:  5'- cGUgaaACAGCAccAGCGggGugccgcuguCGCCgCCGGu -3'
miRNA:   3'- aCG---UGUCGU--UUGCuuUu--------GCGGgGGCC- -5'
12876 5' -52.8 NC_003387.1 + 15422 0.66 0.850082
Target:  5'- gGCGCGGUcGACGAccgcgccgacGAGCGCgCCaGGc -3'
miRNA:   3'- aCGUGUCGuUUGCU----------UUUGCGgGGgCC- -5'
12876 5' -52.8 NC_003387.1 + 13146 0.66 0.850082
Target:  5'- gUGCGCAGC--GCGAAcAgGCCgUCGa -3'
miRNA:   3'- -ACGUGUCGuuUGCUUuUgCGGgGGCc -5'
12876 5' -52.8 NC_003387.1 + 28496 0.66 0.850082
Target:  5'- cGUcgGCGGCAAccACGAcGACGCUaaCCGGc -3'
miRNA:   3'- aCG--UGUCGUU--UGCUuUUGCGGg-GGCC- -5'
12876 5' -52.8 NC_003387.1 + 19339 0.66 0.850082
Target:  5'- aGCGCGGCGAgaaccuggccggGCGGGcucugguugccACGCCUgCGGg -3'
miRNA:   3'- aCGUGUCGUU------------UGCUUu----------UGCGGGgGCC- -5'
12876 5' -52.8 NC_003387.1 + 33748 0.66 0.849214
Target:  5'- gGCACcccGGCAagggcAACGGcgGCGCCgcgagcgguuuggCCCGGc -3'
miRNA:   3'- aCGUG---UCGU-----UUGCUuuUGCGG-------------GGGCC- -5'
12876 5' -52.8 NC_003387.1 + 47478 0.66 0.844838
Target:  5'- cGCACAGCGGGCGAguuguucagcaugucGAGCaGCaucgugcgguaCCCGa -3'
miRNA:   3'- aCGUGUCGUUUGCU---------------UUUG-CGg----------GGGCc -5'
12876 5' -52.8 NC_003387.1 + 45859 0.66 0.841296
Target:  5'- cUGCGCgAGCugcuGCGGcuGCGCgCCgCGGc -3'
miRNA:   3'- -ACGUG-UCGuu--UGCUuuUGCG-GGgGCC- -5'
12876 5' -52.8 NC_003387.1 + 44007 0.66 0.841296
Target:  5'- cUGC-CAGCAAACGguGACaGCaCCUCa- -3'
miRNA:   3'- -ACGuGUCGUUUGCuuUUG-CG-GGGGcc -5'
12876 5' -52.8 NC_003387.1 + 52591 0.66 0.841296
Target:  5'- cGCcCGGCGAGCGAGcucagcaaacACGCCCUgaccugCGGu -3'
miRNA:   3'- aCGuGUCGUUUGCUUu---------UGCGGGG------GCC- -5'
12876 5' -52.8 NC_003387.1 + 6831 0.66 0.841296
Target:  5'- cGgGCGGCAGGuCGAu--CGCCCgCuCGGc -3'
miRNA:   3'- aCgUGUCGUUU-GCUuuuGCGGG-G-GCC- -5'
12876 5' -52.8 NC_003387.1 + 12334 0.66 0.841296
Target:  5'- cGUGCAGCucgccgccGACGucGAgGCCCuuGGc -3'
miRNA:   3'- aCGUGUCGu-------UUGCuuUUgCGGGggCC- -5'
12876 5' -52.8 NC_003387.1 + 20429 0.66 0.841296
Target:  5'- uUGUGCAGCcgcCGGugcuccucGCGCCCCCa- -3'
miRNA:   3'- -ACGUGUCGuuuGCUuu------UGCGGGGGcc -5'
12876 5' -52.8 NC_003387.1 + 34957 0.66 0.841296
Target:  5'- cGUuuCGGCcgacgccgugauGAGCGguGugGCCCCUGGc -3'
miRNA:   3'- aCGu-GUCG------------UUUGCuuUugCGGGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 48887 0.66 0.841296
Target:  5'- uUGCugGGCcaccGCGAAAuCGCCUgCGa -3'
miRNA:   3'- -ACGugUCGuu--UGCUUUuGCGGGgGCc -5'
12876 5' -52.8 NC_003387.1 + 48849 0.66 0.841296
Target:  5'- cGCACGGCGuGC----ACGCCCuggugcgcagCCGGa -3'
miRNA:   3'- aCGUGUCGUuUGcuuuUGCGGG----------GGCC- -5'
12876 5' -52.8 NC_003387.1 + 46617 0.66 0.840405
Target:  5'- cGCGCAugucGCAGGuguucgagccugcCGAcGACGCCCCggCGGu -3'
miRNA:   3'- aCGUGU----CGUUU-------------GCUuUUGCGGGG--GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.