Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12882 | 5' | -62.8 | NC_003387.1 | + | 46993 | 0.66 | 0.376889 |
Target: 5'- uGCCCGgCUCaagcGUGCGGcCGUgcacgacgaCCUCGg -3' miRNA: 3'- gCGGGCgGAGc---UACGCCaGCG---------GGAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 26842 | 0.66 | 0.376889 |
Target: 5'- gGCCUGCUcggCGAgcUGUGGaUGCaCCUCGg -3' miRNA: 3'- gCGGGCGGa--GCU--ACGCCaGCG-GGAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 2577 | 0.66 | 0.374392 |
Target: 5'- aCGCCgacccgucggucgaCGCCUgGccGCaGUaCGCCCUCGa -3' miRNA: 3'- -GCGG--------------GCGGAgCuaCGcCA-GCGGGAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 13265 | 0.66 | 0.368609 |
Target: 5'- uGCCgCGCuuCUCGAUcGCgucggccaGGUCGCgCUCGg -3' miRNA: 3'- gCGG-GCG--GAGCUA-CG--------CCAGCGgGAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 32338 | 0.66 | 0.368609 |
Target: 5'- aCGCCUugucgGCCUCGGcgacggccagGCGGUCgGCCagCUCGu -3' miRNA: 3'- -GCGGG-----CGGAGCUa---------CGCCAG-CGG--GAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 35700 | 0.66 | 0.368609 |
Target: 5'- cCGgCCGCCUCG--GCGG--GCuCCUCGg -3' miRNA: 3'- -GCgGGCGGAGCuaCGCCagCG-GGAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 10052 | 0.66 | 0.368609 |
Target: 5'- gGUgCGCCcUGcgGCGGauucuuaugcgCGCCCUCGg -3' miRNA: 3'- gCGgGCGGaGCuaCGCCa----------GCGGGAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 35630 | 0.66 | 0.368609 |
Target: 5'- aGCCCGCCgaggCGGccggGCGGgcacuggcCGaCCUCGa -3' miRNA: 3'- gCGGGCGGa---GCUa---CGCCa-------GCgGGAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 42298 | 0.66 | 0.368609 |
Target: 5'- uCGCCCaUCgCGGUGCgccGGUCGCCgUCc -3' miRNA: 3'- -GCGGGcGGaGCUACG---CCAGCGGgAGc -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 46638 | 0.66 | 0.360454 |
Target: 5'- aGCCUGCCgaCGAcgccccgGCGGUCGUCauggugcgCUCGa -3' miRNA: 3'- gCGGGCGGa-GCUa------CGCCAGCGG--------GAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 3061 | 0.66 | 0.360454 |
Target: 5'- cCGCCCGCCUCGGU-CGaGcCGUacaaccugauCCUUGa -3' miRNA: 3'- -GCGGGCGGAGCUAcGC-CaGCG----------GGAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 13751 | 0.66 | 0.360454 |
Target: 5'- aCGCCgacauaGCgUCGA--CGG-CGCCCUCGg -3' miRNA: 3'- -GCGGg-----CGgAGCUacGCCaGCGGGAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 10320 | 0.66 | 0.344525 |
Target: 5'- aGCCCGCgCUCGgcGCGGcucaUCGCgUcgCGg -3' miRNA: 3'- gCGGGCG-GAGCuaCGCC----AGCGgGa-GC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 26007 | 0.66 | 0.341401 |
Target: 5'- aGCaCCGCCUCGAcgaggccgcgcugGUGGUcggugagcgcgcCGCCCUgGa -3' miRNA: 3'- gCG-GGCGGAGCUa------------CGCCA------------GCGGGAgC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 32908 | 0.66 | 0.335982 |
Target: 5'- cCGcCCCGCCccgCGGUGCGGgcugCGCUgagauugCUUGa -3' miRNA: 3'- -GC-GGGCGGa--GCUACGCCa---GCGG-------GAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 10249 | 0.67 | 0.329109 |
Target: 5'- aGCCgCGCCgagCGcgGgcucaaGGUCGCCC-CGa -3' miRNA: 3'- gCGG-GCGGa--GCuaCg-----CCAGCGGGaGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 50861 | 0.67 | 0.329109 |
Target: 5'- gCGCaagaCG-CUCGAUugGGUCGCCCUUGa -3' miRNA: 3'- -GCGg---GCgGAGCUAcgCCAGCGGGAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 36728 | 0.67 | 0.328351 |
Target: 5'- uGCCCgGCCUCGAcgccgucUGCGaG-CGCCUgggCGu -3' miRNA: 3'- gCGGG-CGGAGCU-------ACGC-CaGCGGGa--GC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 45852 | 0.67 | 0.322339 |
Target: 5'- gGCCUGCgcaGcgGCGGgcaggcgccacagcgCGCCCUCGg -3' miRNA: 3'- gCGGGCGgagCuaCGCCa--------------GCGGGAGC- -5' |
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12882 | 5' | -62.8 | NC_003387.1 | + | 47062 | 0.67 | 0.321593 |
Target: 5'- gGCCCGCgCUCGucGUcGUCGCCCg-- -3' miRNA: 3'- gCGGGCG-GAGCuaCGcCAGCGGGagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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