miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12917 3' -53.2 NC_003387.1 + 11357 0.66 0.856437
Target:  5'- gCCGUCAcuGCaGACGgccgggucgucguuuGCGgCGAucGGCGCCa -3'
miRNA:   3'- gGGCAGU--UG-CUGU---------------UGUgGUU--CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 33547 0.66 0.853073
Target:  5'- gCCGUUAGCGACcgUGCgGgccGCGCCc -3'
miRNA:   3'- gGGCAGUUGCUGuuGUGgUuc-CGCGG- -5'
12917 3' -53.2 NC_003387.1 + 449 0.66 0.853073
Target:  5'- gUCUGUCGccgccGCGGCG--GCCGAcGGCGaCCg -3'
miRNA:   3'- -GGGCAGU-----UGCUGUugUGGUU-CCGC-GG- -5'
12917 3' -53.2 NC_003387.1 + 43426 0.66 0.853073
Target:  5'- gCCGacagCAAguuCGACGAgGCCAAGGUcaaGCUg -3'
miRNA:   3'- gGGCa---GUU---GCUGUUgUGGUUCCG---CGG- -5'
12917 3' -53.2 NC_003387.1 + 30453 0.66 0.853073
Target:  5'- gCCGagcACGGCGcccugcuguGCACCAAgugcuucccgucGGCGCCg -3'
miRNA:   3'- gGGCaguUGCUGU---------UGUGGUU------------CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 19965 0.66 0.853073
Target:  5'- aCCgCGUCGACuucACAACGCUgcccucGGgGCCg -3'
miRNA:   3'- -GG-GCAGUUGc--UGUUGUGGuu----CCgCGG- -5'
12917 3' -53.2 NC_003387.1 + 11762 0.66 0.853073
Target:  5'- gUgGUCGAagauuuggGGCGGCAUCAAGGcCGCUg -3'
miRNA:   3'- gGgCAGUUg-------CUGUUGUGGUUCC-GCGG- -5'
12917 3' -53.2 NC_003387.1 + 5825 0.66 0.853073
Target:  5'- cCCCGcgcaaggCGGCGGCGGCcUCAAguccGGUGCCn -3'
miRNA:   3'- -GGGCa------GUUGCUGUUGuGGUU----CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 40885 0.66 0.853073
Target:  5'- uUCCG-CGGCGACcuaAUCAAGGcCGCg -3'
miRNA:   3'- -GGGCaGUUGCUGuugUGGUUCC-GCGg -5'
12917 3' -53.2 NC_003387.1 + 23813 0.66 0.853073
Target:  5'- gCCGcgCAGCaGAUAcgugagggcgccGCGCCGGgacucGGCGCCg -3'
miRNA:   3'- gGGCa-GUUG-CUGU------------UGUGGUU-----CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 34102 0.66 0.853073
Target:  5'- -gCGUCGgcaugacguACGACGAaacgagcgcCACCGAGGCGg- -3'
miRNA:   3'- ggGCAGU---------UGCUGUU---------GUGGUUCCGCgg -5'
12917 3' -53.2 NC_003387.1 + 2876 0.66 0.853073
Target:  5'- cCUCGUCGuacauCGGCAGgaacucgcuCGCCG-GGCGCg -3'
miRNA:   3'- -GGGCAGUu----GCUGUU---------GUGGUuCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 21535 0.66 0.853073
Target:  5'- gCgCGUCGcguuCGACGugccgcccgGCACCGAGGCaaCCg -3'
miRNA:   3'- -GgGCAGUu---GCUGU---------UGUGGUUCCGc-GG- -5'
12917 3' -53.2 NC_003387.1 + 27337 0.66 0.847956
Target:  5'- uCUCGUCGAgcagccgcagccccuCGACcuCGCCGcucuuGGCGCUg -3'
miRNA:   3'- -GGGCAGUU---------------GCUGuuGUGGUu----CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 35463 0.66 0.847956
Target:  5'- gUCGUCGAacuggaucgacguuuCGAC-ACGCCAcGGCGUg -3'
miRNA:   3'- gGGCAGUU---------------GCUGuUGUGGUuCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 4050 0.66 0.844499
Target:  5'- uCCUGg-GGCGACGAUuCCGAGGUGgUg -3'
miRNA:   3'- -GGGCagUUGCUGUUGuGGUUCCGCgG- -5'
12917 3' -53.2 NC_003387.1 + 36438 0.66 0.844499
Target:  5'- gCCGUUcguGACGcgcgaGCAGCucGCCcAGGCGCa -3'
miRNA:   3'- gGGCAG---UUGC-----UGUUG--UGGuUCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 19594 0.66 0.844499
Target:  5'- -gCGUCGACGugugGCAgucguuccuugACGCCGcgaaGGGCGCg -3'
miRNA:   3'- ggGCAGUUGC----UGU-----------UGUGGU----UCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 3507 0.66 0.844499
Target:  5'- gCUGUCgAACGAacCGGCGCCA--GUGCCc -3'
miRNA:   3'- gGGCAG-UUGCU--GUUGUGGUucCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 21114 0.66 0.844499
Target:  5'- gCgGUC-ACGA--AUACCGAGGCggGCCa -3'
miRNA:   3'- gGgCAGuUGCUguUGUGGUUCCG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.