miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12924 3' -67.3 NC_003387.1 + 52275 0.66 0.226862
Target:  5'- cGGCCGCCgCGGCG-GCGaCaGacuuaaCCGCc -3'
miRNA:   3'- -CCGGCGGaGCCGCuCGC-GcCg-----GGCGc -5'
12924 3' -67.3 NC_003387.1 + 49665 0.66 0.226862
Target:  5'- cGGCuCGaCCgaGGCGGGCGgGaacGCCUGCGc -3'
miRNA:   3'- -CCG-GC-GGagCCGCUCGCgC---CGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 22584 0.66 0.226315
Target:  5'- gGGUgGCCUCGGUGcggccacggucgaAGCucaGGCCCuuGCGg -3'
miRNA:   3'- -CCGgCGGAGCCGC-------------UCGcg-CCGGG--CGC- -5'
12924 3' -67.3 NC_003387.1 + 42397 0.66 0.226315
Target:  5'- cGGCUGCCUgacugaGGagcaguuCGAGCa-GGCCCGCa -3'
miRNA:   3'- -CCGGCGGAg-----CC-------GCUCGcgCCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 47006 0.66 0.223594
Target:  5'- gGGCCGCCUggugcucgacuucauUGGCG-GCcCGGCCgGgCa -3'
miRNA:   3'- -CCGGCGGA---------------GCCGCuCGcGCCGGgC-Gc -5'
12924 3' -67.3 NC_003387.1 + 40495 0.66 0.221438
Target:  5'- cGCCGCUgcgcUGGCGAccGCcgGUGGCCCgGCa -3'
miRNA:   3'- cCGGCGGa---GCCGCU--CG--CGCCGGG-CGc -5'
12924 3' -67.3 NC_003387.1 + 4177 0.66 0.221438
Target:  5'- uGGCaCGugaCCUCGGCGcGGUGCuucGGCcaCCGCGu -3'
miRNA:   3'- -CCG-GC---GGAGCCGC-UCGCG---CCG--GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 31219 0.66 0.220902
Target:  5'- cGGCCGgCUCGuGC-AGCGacacgaaccagccCGGCCCGa- -3'
miRNA:   3'- -CCGGCgGAGC-CGcUCGC-------------GCCGGGCgc -5'
12924 3' -67.3 NC_003387.1 + 8899 0.66 0.218237
Target:  5'- cGCCGCCauuuUCGGCGAGgGCaacguGCucacguccgaggccaCCGCGa -3'
miRNA:   3'- cCGGCGG----AGCCGCUCgCGc----CG---------------GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 28759 0.66 0.218237
Target:  5'- aGCCGCC-CGGCGcuGCGCacgugcugcagcaugGGCacuggcacaCCGCGg -3'
miRNA:   3'- cCGGCGGaGCCGCu-CGCG---------------CCG---------GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 52090 0.66 0.216125
Target:  5'- cGCUGCCgcggCGGCGA-CGCuGCCCuCGc -3'
miRNA:   3'- cCGGCGGa---GCCGCUcGCGcCGGGcGC- -5'
12924 3' -67.3 NC_003387.1 + 5307 0.66 0.216125
Target:  5'- aGGCCcuCCUCGGgcucgGGGCGgGGCCgGUu -3'
miRNA:   3'- -CCGGc-GGAGCCg----CUCGCgCCGGgCGc -5'
12924 3' -67.3 NC_003387.1 + 14796 0.66 0.216125
Target:  5'- uGGCgUGCC-CGGCG-GUGcCGaGCCaCGCGg -3'
miRNA:   3'- -CCG-GCGGaGCCGCuCGC-GC-CGG-GCGC- -5'
12924 3' -67.3 NC_003387.1 + 10517 0.66 0.216125
Target:  5'- cGCuCGgCUCGGCGA-UGCGGgCCGgGu -3'
miRNA:   3'- cCG-GCgGAGCCGCUcGCGCCgGGCgC- -5'
12924 3' -67.3 NC_003387.1 + 19868 0.66 0.216125
Target:  5'- cGG-CGCagUCGGCGA-CGCGGaaccgccccgcCCCGCGg -3'
miRNA:   3'- -CCgGCGg-AGCCGCUcGCGCC-----------GGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 21777 0.66 0.216125
Target:  5'- gGGCaGCCagCGGCGcacgaucuGCGaCGGCCCGg- -3'
miRNA:   3'- -CCGgCGGa-GCCGCu-------CGC-GCCGGGCgc -5'
12924 3' -67.3 NC_003387.1 + 45078 0.66 0.2156
Target:  5'- gGGCCGuCCUgGGCcGGUguucgGCGGCcaggucgucgacgCCGCGg -3'
miRNA:   3'- -CCGGC-GGAgCCGcUCG-----CGCCG-------------GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 39758 0.66 0.214553
Target:  5'- uGGCCGCC-CGGUacGAGCcgccagacgccgacGUGGCaCUGCc -3'
miRNA:   3'- -CCGGCGGaGCCG--CUCG--------------CGCCG-GGCGc -5'
12924 3' -67.3 NC_003387.1 + 38200 0.66 0.211437
Target:  5'- cGGCCGCCgaguaccgcacgcaGGCGcaccuguauGGcCGCGGCuaCCGCa -3'
miRNA:   3'- -CCGGCGGag------------CCGC---------UC-GCGCCG--GGCGc -5'
12924 3' -67.3 NC_003387.1 + 4324 0.66 0.210922
Target:  5'- uGGuuGCC-CaGGCu-GCGCccGGCCCGCu -3'
miRNA:   3'- -CCggCGGaG-CCGcuCGCG--CCGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.