miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12929 5' -52.5 NC_003387.1 + 10778 0.66 0.895628
Target:  5'- -gGCGGCcugcaucgUCGGGucGUCGGcguCGGCGGCa -3'
miRNA:   3'- cgUGCUG--------AGCCU--UAGCUu--GCUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 6366 0.66 0.895628
Target:  5'- cGCGCuuGGcCUCGGccgCGGGCGAC-GCCu -3'
miRNA:   3'- -CGUG--CU-GAGCCuuaGCUUGCUGcCGG- -5'
12929 5' -52.5 NC_003387.1 + 19728 0.66 0.895628
Target:  5'- aGCACGGCcCGc--UCGAACG-CGGgCa -3'
miRNA:   3'- -CGUGCUGaGCcuuAGCUUGCuGCCgG- -5'
12929 5' -52.5 NC_003387.1 + 38947 0.66 0.895628
Target:  5'- aGCGCGAC-CGG-GUCcauacCGAcCGGCCc -3'
miRNA:   3'- -CGUGCUGaGCCuUAGcuu--GCU-GCCGG- -5'
12929 5' -52.5 NC_003387.1 + 21260 0.66 0.895628
Target:  5'- cCGCGACgaGGAGUCGGGCaaGGUGGCg -3'
miRNA:   3'- cGUGCUGagCCUUAGCUUG--CUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 49397 0.66 0.895628
Target:  5'- cGCACGcuGCgcaggCGGAugCGGAgGugGGCg -3'
miRNA:   3'- -CGUGC--UGa----GCCUuaGCUUgCugCCGg -5'
12929 5' -52.5 NC_003387.1 + 11577 0.66 0.895628
Target:  5'- gGCACcaaGGCguaCGGcGUC--GCGAUGGCCg -3'
miRNA:   3'- -CGUG---CUGa--GCCuUAGcuUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 10606 0.66 0.891342
Target:  5'- aGCACGGucgcCUCGGucaugcaggacgCGAccGCGGCGGUg -3'
miRNA:   3'- -CGUGCU----GAGCCuua---------GCU--UGCUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 33985 0.66 0.888431
Target:  5'- cGCAgCGGgUCGcGGUCGA-CGACGaGCUg -3'
miRNA:   3'- -CGU-GCUgAGCcUUAGCUuGCUGC-CGG- -5'
12929 5' -52.5 NC_003387.1 + 7512 0.66 0.888431
Target:  5'- cCACGAUcggcCGcGggUCGAACG--GGCCg -3'
miRNA:   3'- cGUGCUGa---GC-CuuAGCUUGCugCCGG- -5'
12929 5' -52.5 NC_003387.1 + 2706 0.66 0.888431
Target:  5'- aGguUGuGCUCGGcgacgCGGGCGGCGGgCa -3'
miRNA:   3'- -CguGC-UGAGCCuua--GCUUGCUGCCgG- -5'
12929 5' -52.5 NC_003387.1 + 45147 0.66 0.888431
Target:  5'- gGCGCGgcGCUCGGAggugGUCGcgUGAgcaGGCa -3'
miRNA:   3'- -CGUGC--UGAGCCU----UAGCuuGCUg--CCGg -5'
12929 5' -52.5 NC_003387.1 + 4775 0.66 0.880972
Target:  5'- gGCGCcguGACUUcauGUCGcaggcccgcGGCGACGGCCa -3'
miRNA:   3'- -CGUG---CUGAGccuUAGC---------UUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 48230 0.66 0.880972
Target:  5'- cGCACGAUcgugUCGcGcccGGUCGGcCG-CGGCCa -3'
miRNA:   3'- -CGUGCUG----AGC-C---UUAGCUuGCuGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 12442 0.66 0.880972
Target:  5'- gGCGCuGC-CGaGGuUCGcuGGCGGCGGCCu -3'
miRNA:   3'- -CGUGcUGaGC-CUuAGC--UUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 46896 0.66 0.880972
Target:  5'- gGCGCaGCcCGGGucGUCGuGC-ACGGCCg -3'
miRNA:   3'- -CGUGcUGaGCCU--UAGCuUGcUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 32982 0.66 0.880972
Target:  5'- cGCGCGACUaCGuGcccgcguUCGAGCG--GGCCg -3'
miRNA:   3'- -CGUGCUGA-GC-Cuu-----AGCUUGCugCCGG- -5'
12929 5' -52.5 NC_003387.1 + 44526 0.66 0.880972
Target:  5'- cGCACGACgUCGcuGUCGAaaacgcgcacGCGGaucaggaagUGGCCg -3'
miRNA:   3'- -CGUGCUG-AGCcuUAGCU----------UGCU---------GCCGG- -5'
12929 5' -52.5 NC_003387.1 + 51852 0.66 0.880212
Target:  5'- gGUACGuCUugccggucugccgCGGGAUCGAcauuGCGAacaugUGGCCg -3'
miRNA:   3'- -CGUGCuGA-------------GCCUUAGCU----UGCU-----GCCGG- -5'
12929 5' -52.5 NC_003387.1 + 23726 0.66 0.876373
Target:  5'- -aACGACUCGGcgcaggcgauccagcGGUCGGGCGucccgcaGGCg -3'
miRNA:   3'- cgUGCUGAGCC---------------UUAGCUUGCug-----CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.