miRNA display CGI


Results 1 - 20 of 329 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12942 3' -54.8 NC_003387.1 + 19213 0.66 0.751502
Target:  5'- cACCuuGCUGGCGuuGAACUUGAucacgcgaucgcGgGCGCCg -3'
miRNA:   3'- -UGG--CGGCCGUu-UUUGAGCU------------CgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 13772 0.66 0.751502
Target:  5'- gGCCgGUCGGUAugGACcCGGucGCGCugCg -3'
miRNA:   3'- -UGG-CGGCCGUuuUUGaGCU--CGCGugG- -5'
12942 3' -54.8 NC_003387.1 + 2553 0.66 0.751502
Target:  5'- cGCCG-CGGCAGAucCUCGccGUGUACg -3'
miRNA:   3'- -UGGCgGCCGUUUuuGAGCu-CGCGUGg -5'
12942 3' -54.8 NC_003387.1 + 10964 0.66 0.751502
Target:  5'- uCCGCCGGguGAucggaaGAauaUCG-GCgGCGCCg -3'
miRNA:   3'- uGGCGGCCguUU------UUg--AGCuCG-CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 46025 0.66 0.751502
Target:  5'- cCCGCgGuGCAAGAcgccgaGCgUCGucgaggaucugcAGCGCACCg -3'
miRNA:   3'- uGGCGgC-CGUUUU------UG-AGC------------UCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 44989 0.66 0.751502
Target:  5'- uGCCGCCgaGGCGGu-GCUgUGAG-GCACUa -3'
miRNA:   3'- -UGGCGG--CCGUUuuUGA-GCUCgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 30440 0.66 0.751502
Target:  5'- gGCCGa-GGCGGugGC-CGAGCacgGCGCCc -3'
miRNA:   3'- -UGGCggCCGUUuuUGaGCUCG---CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 48204 0.66 0.751502
Target:  5'- cACCGgCGGCGGcgGC-CGAGgugaccCGCACg -3'
miRNA:   3'- -UGGCgGCCGUUuuUGaGCUC------GCGUGg -5'
12942 3' -54.8 NC_003387.1 + 37296 0.66 0.751502
Target:  5'- cGCuCGUCGGCGcgGucgUCGAcCGCGCCg -3'
miRNA:   3'- -UG-GCGGCCGUuuUug-AGCUcGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 16457 0.66 0.748372
Target:  5'- gGCCGCCauaauccacagcccGGCGuAAACcauugCGAGaGCGCCc -3'
miRNA:   3'- -UGGCGG--------------CCGUuUUUGa----GCUCgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 6713 0.66 0.748372
Target:  5'- cACCGCgGGCAGuucaccgucGAcucgccccGCUCGAcauacaggcccacaGCGCACg -3'
miRNA:   3'- -UGGCGgCCGUU---------UU--------UGAGCU--------------CGCGUGg -5'
12942 3' -54.8 NC_003387.1 + 44430 0.66 0.74208
Target:  5'- -gCGCCGGUGAuccacacgucgccCUCGGGCguguGCACCu -3'
miRNA:   3'- ugGCGGCCGUUuuu----------GAGCUCG----CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 32675 0.66 0.741027
Target:  5'- aGCCcuaCCGGCAA--GCUCuaaauacccuGAGCcaGCACCg -3'
miRNA:   3'- -UGGc--GGCCGUUuuUGAG----------CUCG--CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 23110 0.66 0.741027
Target:  5'- aGCCGCUGGC----GCcCG-GCGCgACCc -3'
miRNA:   3'- -UGGCGGCCGuuuuUGaGCuCGCG-UGG- -5'
12942 3' -54.8 NC_003387.1 + 29728 0.66 0.741027
Target:  5'- gGCCGacgaCGGCAGcuACgCGGGCGaGCUg -3'
miRNA:   3'- -UGGCg---GCCGUUuuUGaGCUCGCgUGG- -5'
12942 3' -54.8 NC_003387.1 + 50788 0.66 0.741027
Target:  5'- aACCGCCuGCGucgcggaUCGGGCGUuuacgggcGCCa -3'
miRNA:   3'- -UGGCGGcCGUuuuug--AGCUCGCG--------UGG- -5'
12942 3' -54.8 NC_003387.1 + 33739 0.66 0.741027
Target:  5'- cGCCGCCaGCucgucgauGCUCGccGGgGUGCCg -3'
miRNA:   3'- -UGGCGGcCGuuuu----UGAGC--UCgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 29691 0.66 0.741027
Target:  5'- cGCCGCCgGGCAcguuGAACUgcuGCGUcgaGCCg -3'
miRNA:   3'- -UGGCGG-CCGUu---UUUGAgcuCGCG---UGG- -5'
12942 3' -54.8 NC_003387.1 + 7321 0.66 0.741027
Target:  5'- aACCGUcacgauCGGCucGGGCggcCGGGCGCAgCu -3'
miRNA:   3'- -UGGCG------GCCGuuUUUGa--GCUCGCGUgG- -5'
12942 3' -54.8 NC_003387.1 + 29601 0.66 0.741027
Target:  5'- cGuuGCCGGUGAGGgucgcGC-CGGGCGCcagcggcuuGCCg -3'
miRNA:   3'- -UggCGGCCGUUUU-----UGaGCUCGCG---------UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.