miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 3' -57.7 NC_003387.1 + 1188 0.66 0.563698
Target:  5'- gGCGGGCGCAgGgGCAaggGUGGCCgUCGAc -3'
miRNA:   3'- aCGCUUGUGU-CgCGUa--CGUCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 42352 0.66 0.563698
Target:  5'- uUGCGGGC-CAGCu--UGCGGCCCa-- -3'
miRNA:   3'- -ACGCUUGuGUCGcguACGUCGGGgcu -5'
12957 3' -57.7 NC_003387.1 + 49176 0.66 0.563698
Target:  5'- gGCGGucGCGCAG-GCG-GCGGCCgUCGAc -3'
miRNA:   3'- aCGCU--UGUGUCgCGUaCGUCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 27239 0.66 0.563698
Target:  5'- aGCuGACAC-GCGCGgucgagGCGGCCCgGc -3'
miRNA:   3'- aCGcUUGUGuCGCGUa-----CGUCGGGgCu -5'
12957 3' -57.7 NC_003387.1 + 47801 0.66 0.562617
Target:  5'- cGCGcGACGCcGCGCcgggcaGUGCAGCuaccgcaCCCGGc -3'
miRNA:   3'- aCGC-UUGUGuCGCG------UACGUCG-------GGGCU- -5'
12957 3' -57.7 NC_003387.1 + 1922 0.66 0.552911
Target:  5'- cGCGGugAggucgaucgugCAGCGCAUGaucCGGCCgCGGg -3'
miRNA:   3'- aCGCUugU-----------GUCGCGUAC---GUCGGgGCU- -5'
12957 3' -57.7 NC_003387.1 + 1614 0.66 0.552911
Target:  5'- gGcCGGGCGC-GUGUggGCAGCCUCGc -3'
miRNA:   3'- aC-GCUUGUGuCGCGuaCGUCGGGGCu -5'
12957 3' -57.7 NC_003387.1 + 38631 0.66 0.552911
Target:  5'- cGCaGGccGCGCuGGCGC-UGCAGUUCCGGc -3'
miRNA:   3'- aCG-CU--UGUG-UCGCGuACGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 31058 0.66 0.552911
Target:  5'- gGCGAACAC-GUGCucgGCcGCCgCCGc -3'
miRNA:   3'- aCGCUUGUGuCGCGua-CGuCGG-GGCu -5'
12957 3' -57.7 NC_003387.1 + 32720 0.66 0.552911
Target:  5'- cGUGAGgucgaACGGCGCcgcggagaaCGGCCCCGAg -3'
miRNA:   3'- aCGCUUg----UGUCGCGuac------GUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 46819 0.66 0.552911
Target:  5'- cGCGuaaGCGGCGCaAUGCuucuGCCgCGGc -3'
miRNA:   3'- aCGCuugUGUCGCG-UACGu---CGGgGCU- -5'
12957 3' -57.7 NC_003387.1 + 11390 0.66 0.542186
Target:  5'- gGCGAu--CGGCGCcacGCuggccgcgaucGGCCCCGAg -3'
miRNA:   3'- aCGCUuguGUCGCGua-CG-----------UCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 16885 0.66 0.542186
Target:  5'- gGCGAuGCACGacauagccgacGCGC-UGCAGUaCCCGGc -3'
miRNA:   3'- aCGCU-UGUGU-----------CGCGuACGUCG-GGGCU- -5'
12957 3' -57.7 NC_003387.1 + 28737 0.66 0.542186
Target:  5'- aGCGAGCagGCGGUGCAcaacCAGCcgCCCGGc -3'
miRNA:   3'- aCGCUUG--UGUCGCGUac--GUCG--GGGCU- -5'
12957 3' -57.7 NC_003387.1 + 47972 0.66 0.542186
Target:  5'- cGCGAGCugGGCgGCAacgGCAaacgguGCUUCGAg -3'
miRNA:   3'- aCGCUUGugUCG-CGUa--CGU------CGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 8869 0.66 0.542186
Target:  5'- cGCG-AUAUAGCaCugGUGCAccGCCCCGAc -3'
miRNA:   3'- aCGCuUGUGUCGcG--UACGU--CGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 14875 0.66 0.542186
Target:  5'- gGCGAGcCGCcgGGCGCAggGguGCCCg-- -3'
miRNA:   3'- aCGCUU-GUG--UCGCGUa-CguCGGGgcu -5'
12957 3' -57.7 NC_003387.1 + 27892 0.66 0.542186
Target:  5'- gGcCGcAgACAGCGCAcacGCGGCCuuGAc -3'
miRNA:   3'- aC-GCuUgUGUCGCGUa--CGUCGGggCU- -5'
12957 3' -57.7 NC_003387.1 + 6665 0.66 0.542186
Target:  5'- cGCucaAGCGCGGUGCGcUGCAGauCCUCGAc -3'
miRNA:   3'- aCGc--UUGUGUCGCGU-ACGUC--GGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 14072 0.66 0.535784
Target:  5'- gUGCGGAUugaugcgccggaacuGCAGCGCcagcGCGGCCUgCGGg -3'
miRNA:   3'- -ACGCUUG---------------UGUCGCGua--CGUCGGG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.