miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12992 5' -60.9 NC_003387.1 + 38057 0.66 0.417139
Target:  5'- cGGGCGGUgGCugAGCgagcGCCGCgucacuguGCgCGGCGg -3'
miRNA:   3'- -CCCGUCA-CG--UCGa---UGGCG--------UGgGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 45379 0.66 0.417139
Target:  5'- -uGCcg-GCGGUUaGCUGCGCCCGGCc -3'
miRNA:   3'- ccCGucaCGUCGA-UGGCGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 24881 0.66 0.417139
Target:  5'- cGGGCGGUgGCuGCgcccuguccACCGacgGCaCCGGCAa -3'
miRNA:   3'- -CCCGUCA-CGuCGa--------UGGCg--UG-GGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 35688 0.66 0.408025
Target:  5'- cGGGCAcGUGUGGggGCCGUACggcgacgaCGGCc -3'
miRNA:   3'- -CCCGU-CACGUCgaUGGCGUGg-------GCCGu -5'
12992 5' -60.9 NC_003387.1 + 22214 0.66 0.408025
Target:  5'- cGGGCucucGCGGCccCgGC-CCCGGCAa -3'
miRNA:   3'- -CCCGuca-CGUCGauGgCGuGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 25562 0.66 0.408024
Target:  5'- gGGGCA--GCAGCUucgcgaCGCGCUCGGa- -3'
miRNA:   3'- -CCCGUcaCGUCGAug----GCGUGGGCCgu -5'
12992 5' -60.9 NC_003387.1 + 6035 0.66 0.408024
Target:  5'- cGGCacgaGGUGCGGCagg-GCGCCgGGCAg -3'
miRNA:   3'- cCCG----UCACGUCGauggCGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 33429 0.66 0.405315
Target:  5'- cGGCuGUGCcuGCUGCUGCGCgCCaccaccucgcgcaaGGCGg -3'
miRNA:   3'- cCCGuCACGu-CGAUGGCGUG-GG--------------CCGU- -5'
12992 5' -60.9 NC_003387.1 + 44625 0.66 0.399036
Target:  5'- uGGCGcgagcGUGUGGCccugGCCGCGgCCuCGGCGa -3'
miRNA:   3'- cCCGU-----CACGUCGa---UGGCGU-GG-GCCGU- -5'
12992 5' -60.9 NC_003387.1 + 12286 0.66 0.399036
Target:  5'- cGGCGGccggauCAGCggGCCGgGCaCCGGCAc -3'
miRNA:   3'- cCCGUCac----GUCGa-UGGCgUG-GGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 35863 0.66 0.399035
Target:  5'- uGGGC-GUGCGGCgccaucuCCuCGCgCGGCGu -3'
miRNA:   3'- -CCCGuCACGUCGau-----GGcGUGgGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 20178 0.66 0.399035
Target:  5'- gGGcGCGGUugauGC-GCUGCUGCGCCUcGCAc -3'
miRNA:   3'- -CC-CGUCA----CGuCGAUGGCGUGGGcCGU- -5'
12992 5' -60.9 NC_003387.1 + 16884 0.66 0.393704
Target:  5'- aGGCGaUGCAcgacauagccgacgcGCUGCaGUACCCGGCc -3'
miRNA:   3'- cCCGUcACGU---------------CGAUGgCGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 31033 0.66 0.390174
Target:  5'- gGGGCGGcgGcCAGC-ACgGCA-CCGGCGc -3'
miRNA:   3'- -CCCGUCa-C-GUCGaUGgCGUgGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 33954 0.66 0.387541
Target:  5'- cGGCAGcuUGCcggggucggguaugAGCUGCCGCAgCgGGUc -3'
miRNA:   3'- cCCGUC--ACG--------------UCGAUGGCGUgGgCCGu -5'
12992 5' -60.9 NC_003387.1 + 8709 0.66 0.381442
Target:  5'- aGGGUgaGGUGCuGUcACCGuUugCUGGCAg -3'
miRNA:   3'- -CCCG--UCACGuCGaUGGC-GugGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 20924 0.66 0.381442
Target:  5'- cGGcGCGGUGCAGUUuuCUGCACUuucUGGUu -3'
miRNA:   3'- -CC-CGUCACGUCGAu-GGCGUGG---GCCGu -5'
12992 5' -60.9 NC_003387.1 + 32494 0.66 0.372842
Target:  5'- cGGCgccguGGUGCGacGaCUGCCGCugcgugcacGCCCGGCc -3'
miRNA:   3'- cCCG-----UCACGU--C-GAUGGCG---------UGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 26041 0.66 0.372842
Target:  5'- -aGCAGcGCgAGCUGCacgaaacgcaGCACCCGGUu -3'
miRNA:   3'- ccCGUCaCG-UCGAUGg---------CGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 15264 0.66 0.372842
Target:  5'- uGGCGGcGCAGC-GCCGCcaGCauGGCAa -3'
miRNA:   3'- cCCGUCaCGUCGaUGGCG--UGggCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.