miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13000 5' -63.2 NC_003387.1 + 3555 0.66 0.340118
Target:  5'- cGCCuGCGCGAc-CGCCUgCGcGCUGGu -3'
miRNA:   3'- -CGGuCGCGCUucGCGGGgGCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 50709 0.66 0.340118
Target:  5'- cGCCugGGCGCGcacaaggucGAGCGUuaCCUCGAcGCCGu -3'
miRNA:   3'- -CGG--UCGCGC---------UUCGCG--GGGGCU-CGGCu -5'
13000 5' -63.2 NC_003387.1 + 45626 0.66 0.340118
Target:  5'- aGUCGGCguacgGCGAGGCgaagaucgGCCgCCUGGcGCCGAa -3'
miRNA:   3'- -CGGUCG-----CGCUUCG--------CGG-GGGCU-CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 4641 0.66 0.340118
Target:  5'- cGgCAGCGCcacccgucGAGGCGCUUCgGGGCgCGGu -3'
miRNA:   3'- -CgGUCGCG--------CUUCGCGGGGgCUCG-GCU- -5'
13000 5' -63.2 NC_003387.1 + 30783 0.66 0.332377
Target:  5'- cGCCuGCcCGc--CGCCCCCGccGCCGAg -3'
miRNA:   3'- -CGGuCGcGCuucGCGGGGGCu-CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 17708 0.66 0.332377
Target:  5'- gGgCAGCaaguucgagGCGguGCGCCCCgGcccGGCCGGg -3'
miRNA:   3'- -CgGUCG---------CGCuuCGCGGGGgC---UCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 3237 0.66 0.332377
Target:  5'- cGCCGG-GCG-GGCGCa-CCG-GCCGAa -3'
miRNA:   3'- -CGGUCgCGCuUCGCGggGGCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 32979 0.66 0.332377
Target:  5'- aGCC-GCGCGAcuacGUGCCCgcguUCGAGCgGGc -3'
miRNA:   3'- -CGGuCGCGCUu---CGCGGG----GGCUCGgCU- -5'
13000 5' -63.2 NC_003387.1 + 26823 0.66 0.332377
Target:  5'- gGUgAGCGCGc--CGCCCUgGAcGCCGGg -3'
miRNA:   3'- -CGgUCGCGCuucGCGGGGgCU-CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 38567 0.66 0.332377
Target:  5'- cCCGGCccgGCGAGGUGCCacaCCuuGCCGu -3'
miRNA:   3'- cGGUCG---CGCUUCGCGGg--GGcuCGGCu -5'
13000 5' -63.2 NC_003387.1 + 5131 0.66 0.324766
Target:  5'- cGCCGcacGCGaCGAGGgGCgCUCGGcGCCGGu -3'
miRNA:   3'- -CGGU---CGC-GCUUCgCGgGGGCU-CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 8309 0.66 0.324766
Target:  5'- aCCGGCGCG--GCGCaucacuacggCCCG-GCCGAc -3'
miRNA:   3'- cGGUCGCGCuuCGCGg---------GGGCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 48837 0.66 0.324766
Target:  5'- uGCuCGGCGCGAcgcacGGCGUgcacgCCCUGgugcgcAGCCGGa -3'
miRNA:   3'- -CG-GUCGCGCU-----UCGCG-----GGGGC------UCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 33909 0.66 0.324766
Target:  5'- cGUCGGCGaucuGCGCgcaaaccgCCCCGAGCUGu -3'
miRNA:   3'- -CGGUCGCgcuuCGCG--------GGGGCUCGGCu -5'
13000 5' -63.2 NC_003387.1 + 48140 0.66 0.324766
Target:  5'- aCCcGCGCGcAGCGCgCCaCCGAGgCCc- -3'
miRNA:   3'- cGGuCGCGCuUCGCG-GG-GGCUC-GGcu -5'
13000 5' -63.2 NC_003387.1 + 40951 0.66 0.324766
Target:  5'- cGCCAagguGCGCGAcGCGaUCgaggCCGAGCUGAa -3'
miRNA:   3'- -CGGU----CGCGCUuCGC-GGg---GGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 3591 0.66 0.324012
Target:  5'- cGgCGGCGCcuGAguuucagGGCGUCCuggCCGAGCUGAg -3'
miRNA:   3'- -CgGUCGCG--CU-------UCGCGGG---GGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 32230 0.66 0.324012
Target:  5'- uGCCGGUGuCGGAGCGgaaaCCCCacccgcggaacgcCGcGCCGAu -3'
miRNA:   3'- -CGGUCGC-GCUUCGC----GGGG-------------GCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 35707 0.66 0.324012
Target:  5'- aGCCGcCGCGGuuugauuAGCGCCCgCUcgGGGUCGAu -3'
miRNA:   3'- -CGGUcGCGCU-------UCGCGGG-GG--CUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 478 0.66 0.322508
Target:  5'- aCCGGCGCGAGcugcucgucgcgauGCGCgCCCGcguGgCGAc -3'
miRNA:   3'- cGGUCGCGCUU--------------CGCGgGGGCu--CgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.