miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13006 5' -54.5 NC_003387.1 + 52076 0.66 0.733631
Target:  5'- gGUUCAUCGgGcGUcGCuGCCGCGGCGg -3'
miRNA:   3'- -CGAGUGGCgUuCA-CGuUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 4082 0.66 0.733631
Target:  5'- gGUUCuGCCGCAugcucGCGAcCCGCGGCGc -3'
miRNA:   3'- -CGAG-UGGCGUuca--CGUU-GGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 47801 0.66 0.733631
Target:  5'- cGCgcgaCGCCGCGccgggcAGUGCAgcuACCGCacccGGCAGa -3'
miRNA:   3'- -CGa---GUGGCGU------UCACGU---UGGCG----CUGUU- -5'
13006 5' -54.5 NC_003387.1 + 33648 0.66 0.733631
Target:  5'- --aCGCUGCAGG-GCAucACCGUGGCc- -3'
miRNA:   3'- cgaGUGGCGUUCaCGU--UGGCGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 46514 0.66 0.733631
Target:  5'- aGCUCGCUcgGCGAcUGCAccaACgGCGGCGu -3'
miRNA:   3'- -CGAGUGG--CGUUcACGU---UGgCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 46826 0.66 0.733631
Target:  5'- aGCUCGCUGCcGGUGCAcgAUCG-GAuCGAg -3'
miRNA:   3'- -CGAGUGGCGuUCACGU--UGGCgCU-GUU- -5'
13006 5' -54.5 NC_003387.1 + 2 0.66 0.733631
Target:  5'- ---uGCCGCGAGggGCG-CCGCGAUc- -3'
miRNA:   3'- cgagUGGCGUUCa-CGUuGGCGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 50165 0.66 0.733631
Target:  5'- gGCguaCACgGCGAGgaucuGCCGCGGCGAc -3'
miRNA:   3'- -CGa--GUGgCGUUCacgu-UGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 45782 0.66 0.722803
Target:  5'- uGCcCGCCGCu-GcGCAgGCCGCGAUGAu -3'
miRNA:   3'- -CGaGUGGCGuuCaCGU-UGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 15375 0.66 0.722803
Target:  5'- ---uGCCGCAgauAGcGCAGCCcGCGGCGGg -3'
miRNA:   3'- cgagUGGCGU---UCaCGUUGG-CGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 49178 0.66 0.722803
Target:  5'- cGgUCG-CGCAGGcgGCGGCCGuCGACGu -3'
miRNA:   3'- -CgAGUgGCGUUCa-CGUUGGC-GCUGUu -5'
13006 5' -54.5 NC_003387.1 + 34192 0.66 0.722803
Target:  5'- uGUUCGCgaaCGCcugcGUGCcACCGCGGCGg -3'
miRNA:   3'- -CGAGUG---GCGuu--CACGuUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 3809 0.66 0.718445
Target:  5'- cGCaCACCGCAAGcGCGACaacgaucgucaggGCGGCGc -3'
miRNA:   3'- -CGaGUGGCGUUCaCGUUGg------------CGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 22152 0.66 0.711881
Target:  5'- aCUCGCgGCAcGGcGCGuaccgGCCGCGGCGg -3'
miRNA:   3'- cGAGUGgCGU-UCaCGU-----UGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 22042 0.66 0.700877
Target:  5'- cGCcC-CCGCcGGUGCGACCGgGuCGGg -3'
miRNA:   3'- -CGaGuGGCGuUCACGUUGGCgCuGUU- -5'
13006 5' -54.5 NC_003387.1 + 35298 0.66 0.700877
Target:  5'- cGUUCGCCGCAcugaaucgGCAcCUGUGGCAGu -3'
miRNA:   3'- -CGAGUGGCGUuca-----CGUuGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 16144 0.66 0.700877
Target:  5'- uGCUgggCACCGCcccgucgaucccGAGUGUGGuauuCCGCGACAc -3'
miRNA:   3'- -CGA---GUGGCG------------UUCACGUU----GGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 15171 0.66 0.700877
Target:  5'- cGCgCGCCGCGAG-GUGAUCGaCGAgGAg -3'
miRNA:   3'- -CGaGUGGCGUUCaCGUUGGC-GCUgUU- -5'
13006 5' -54.5 NC_003387.1 + 25991 0.66 0.689803
Target:  5'- cGCUCGCCG-GGGUcGCGauccagcucgcGCCGCGcACGAc -3'
miRNA:   3'- -CGAGUGGCgUUCA-CGU-----------UGGCGC-UGUU- -5'
13006 5' -54.5 NC_003387.1 + 52582 0.66 0.689803
Target:  5'- aGCUCggcggcgcggAUCGCGAGgGCGACCGCaucgaGGCGGg -3'
miRNA:   3'- -CGAG----------UGGCGUUCaCGUUGGCG-----CUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.