Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13114 | 3' | -56.1 | NC_003401.1 | + | 132812 | 0.66 | 0.907044 |
Target: 5'- cGGGCcCCGGCCccccucccGGCGGCgCGgaGACCACc -3' miRNA: 3'- -CCUGcGGCUGG--------UUGCUG-GCg-UUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 72478 | 0.66 | 0.907044 |
Target: 5'- -cGCGCgucaCGGCCu-UGGCCGUGGCCGCc -3' miRNA: 3'- ccUGCG----GCUGGuuGCUGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 72072 | 0.66 | 0.907044 |
Target: 5'- -uAUG-CGACCAAaauUGACCGCAaagaauACCACg -3' miRNA: 3'- ccUGCgGCUGGUU---GCUGGCGU------UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 8917 | 0.66 | 0.907044 |
Target: 5'- gGGACGCaggCGcCCugUGGCgGCGACCGg -3' miRNA: 3'- -CCUGCG---GCuGGuuGCUGgCGUUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 100150 | 0.66 | 0.90643 |
Target: 5'- ---aGCUuuaucaaGACCAACGAguggaCCGCGGCCAUc -3' miRNA: 3'- ccugCGG-------CUGGUUGCU-----GGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 119226 | 0.66 | 0.900799 |
Target: 5'- aGGugGgUGACUgguuGCGcCUGCGACCAa -3' miRNA: 3'- -CCugCgGCUGGu---UGCuGGCGUUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 61177 | 0.66 | 0.900799 |
Target: 5'- --cUGCCuGAUC-ACGGgCGCGACCACc -3' miRNA: 3'- ccuGCGG-CUGGuUGCUgGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 132653 | 0.66 | 0.900799 |
Target: 5'- cGGCGCCG-CCGggcuCGGCCG-GACCGg -3' miRNA: 3'- cCUGCGGCuGGUu---GCUGGCgUUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118589 | 0.66 | 0.900799 |
Target: 5'- ---gGCCGGCCGGCcucuGCC-CGGCCACc -3' miRNA: 3'- ccugCGGCUGGUUGc---UGGcGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118880 | 0.66 | 0.900799 |
Target: 5'- -cGCGCCG-CCaAGCGGC-GCGGCCGg -3' miRNA: 3'- ccUGCGGCuGG-UUGCUGgCGUUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 117861 | 0.66 | 0.899522 |
Target: 5'- cGGCGCCaaagagcGGCCGAUGgguacgcGCgGCGACCAUc -3' miRNA: 3'- cCUGCGG-------CUGGUUGC-------UGgCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 116727 | 0.66 | 0.894323 |
Target: 5'- -uGCGCaauGCCAGCcucCCGCGACCAUg -3' miRNA: 3'- ccUGCGgc-UGGUUGcu-GGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 128310 | 0.66 | 0.894323 |
Target: 5'- -uACGCCG-UCAugGcCCGCAggaGCUACa -3' miRNA: 3'- ccUGCGGCuGGUugCuGGCGU---UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 10659 | 0.66 | 0.894323 |
Target: 5'- cGGA-GCCacgGACCAccaccgUGGCgGCAACCGCg -3' miRNA: 3'- -CCUgCGG---CUGGUu-----GCUGgCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 23979 | 0.66 | 0.894323 |
Target: 5'- uGGcUGCCGccagcguCCAAUGGCCGC-GCCGg -3' miRNA: 3'- -CCuGCGGCu------GGUUGCUGGCGuUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 14215 | 0.66 | 0.893663 |
Target: 5'- gGGGCGCUagagggugucgggGACCGGCcggGugCGCGaaucgauugGCCGCg -3' miRNA: 3'- -CCUGCGG-------------CUGGUUG---CugGCGU---------UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 7590 | 0.66 | 0.890328 |
Target: 5'- aGGACGgaaacCCGGCCGACGAgcacCCaaaguacacguacugGCAGCUAUg -3' miRNA: 3'- -CCUGC-----GGCUGGUUGCU----GG---------------CGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 48610 | 0.66 | 0.887619 |
Target: 5'- cGGAU-CgGACCAaucuagcggcaACGGCCGCGgaucuuGCCGCu -3' miRNA: 3'- -CCUGcGgCUGGU-----------UGCUGGCGU------UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118106 | 0.66 | 0.886936 |
Target: 5'- uGGGgGCCGcgcgccACCAugGGCCcCAgauuuggGCCGCg -3' miRNA: 3'- -CCUgCGGC------UGGUugCUGGcGU-------UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 48428 | 0.66 | 0.880691 |
Target: 5'- aGugGCagcggcaaGAUCcGCGGCCGUuGCCGCu -3' miRNA: 3'- cCugCGg-------CUGGuUGCUGGCGuUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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