miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13161 5' -71.5 NC_003401.1 + 8654 0.66 0.301536
Target:  5'- aCCCCCaCGUGCUgggCUCCGCGgcaaUCGCCa- -3'
miRNA:   3'- -GGGGG-GCGCGG---GGGGCGCg---GGCGGcg -5'
13161 5' -71.5 NC_003401.1 + 23409 0.66 0.30091
Target:  5'- uCUUUCgGUGCCCUCCGaaCGacccggaaaaaucCCCGCCGCg -3'
miRNA:   3'- -GGGGGgCGCGGGGGGC--GC-------------GGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 127672 0.66 0.295313
Target:  5'- aCCUgCgGCGCUCCCCagguaaagcgaGCGCUgGuuGCc -3'
miRNA:   3'- -GGGgGgCGCGGGGGG-----------CGCGGgCggCG- -5'
13161 5' -71.5 NC_003401.1 + 87814 0.66 0.295313
Target:  5'- ---gCCGCaUCCCCCaCGCCCGCCa- -3'
miRNA:   3'- ggggGGCGcGGGGGGcGCGGGCGGcg -5'
13161 5' -71.5 NC_003401.1 + 122141 0.66 0.295313
Target:  5'- uCCacgaCCCGCaGCCaCCUgaGCGCgCGCaCGCa -3'
miRNA:   3'- -GGg---GGGCG-CGG-GGGg-CGCGgGCG-GCG- -5'
13161 5' -71.5 NC_003401.1 + 17651 0.66 0.28919
Target:  5'- gCCaCgCGCGCCgCgUCCGCGUcgCCGCCGg -3'
miRNA:   3'- gGG-GgGCGCGG-G-GGGCGCG--GGCGGCg -5'
13161 5' -71.5 NC_003401.1 + 71816 0.66 0.28919
Target:  5'- aCCCUggaacgCGCGCCCCCaCGCGUUCauuaUGCa -3'
miRNA:   3'- gGGGG------GCGCGGGGG-GCGCGGGcg--GCG- -5'
13161 5' -71.5 NC_003401.1 + 132809 0.66 0.283167
Target:  5'- -gCCCCG-GCCCCCCuC-CCgGCgGCg -3'
miRNA:   3'- ggGGGGCgCGGGGGGcGcGGgCGgCG- -5'
13161 5' -71.5 NC_003401.1 + 89273 0.66 0.277243
Target:  5'- cCCCUCUGCGUcguUCCCUGCGCagCGaaCCGUg -3'
miRNA:   3'- -GGGGGGCGCG---GGGGGCGCGg-GC--GGCG- -5'
13161 5' -71.5 NC_003401.1 + 23994 0.66 0.277243
Target:  5'- aCCCaaCGCGCCCauuggcugccgCCaGCGUCCaaugGCCGCg -3'
miRNA:   3'- -GGGggGCGCGGG-----------GGgCGCGGG----CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 17517 0.66 0.271419
Target:  5'- gCCCCCGgGUucgugcuggacUCCUCuCGCCCGCUGa -3'
miRNA:   3'- gGGGGGCgCG-----------GGGGGcGCGGGCGGCg -5'
13161 5' -71.5 NC_003401.1 + 49885 0.66 0.271419
Target:  5'- aUCCgCCGCGCgCCUgGC-CCCGCaCGa -3'
miRNA:   3'- -GGGgGGCGCGgGGGgCGcGGGCG-GCg -5'
13161 5' -71.5 NC_003401.1 + 107064 0.66 0.271419
Target:  5'- aCUCCCaGCGCCCCCCaa-CCaaCCGCa -3'
miRNA:   3'- gGGGGG-CGCGGGGGGcgcGGgcGGCG- -5'
13161 5' -71.5 NC_003401.1 + 133539 0.66 0.271419
Target:  5'- --aCCCGgGCCucuCCCC-CGCCCGgaCCGCc -3'
miRNA:   3'- gggGGGCgCGG---GGGGcGCGGGC--GGCG- -5'
13161 5' -71.5 NC_003401.1 + 118279 0.66 0.271419
Target:  5'- uCUCCCCG-GCUCCCga-GCCCGgggcCCGCg -3'
miRNA:   3'- -GGGGGGCgCGGGGGgcgCGGGC----GGCG- -5'
13161 5' -71.5 NC_003401.1 + 132479 0.66 0.270842
Target:  5'- aCUCCCgggaGCGCCCCgguccggCCGaGCCCgGCgGCg -3'
miRNA:   3'- -GGGGGg---CGCGGGG-------GGCgCGGG-CGgCG- -5'
13161 5' -71.5 NC_003401.1 + 107604 0.66 0.265694
Target:  5'- aCCCUaugccagaaGaCGCCacgcuCCCGgGUCCGCCGCc -3'
miRNA:   3'- gGGGGg--------C-GCGGg----GGGCgCGGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 21782 0.66 0.260067
Target:  5'- gCCgCgGcCGUCCgCUGCGCgUGCCGCg -3'
miRNA:   3'- gGGgGgC-GCGGGgGGCGCGgGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 9338 0.66 0.260067
Target:  5'- gCCCCCCGaggaacagcuacCGaCCCCuaGCGCCgG-CGCc -3'
miRNA:   3'- -GGGGGGC------------GC-GGGGggCGCGGgCgGCG- -5'
13161 5' -71.5 NC_003401.1 + 23009 0.67 0.254538
Target:  5'- gCCCUuuGgGCCCCgCGCGUCUGggggUGCg -3'
miRNA:   3'- -GGGGggCgCGGGGgGCGCGGGCg---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.