miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 74590 0.66 0.879465
Target:  5'- cGGCGCGgcgucccgcggccgGCGC-GCCUCGCCgccgcgccaacagcgGGgUGGUg -3'
miRNA:   3'- -CUGCGU--------------UGCGaCGGAGUGG---------------CCgACCG- -5'
13934 3' -59.2 NC_003521.1 + 128171 0.66 0.878786
Target:  5'- gGGCGUGGgGUcgUGCagCACCGGgUGGCa -3'
miRNA:   3'- -CUGCGUUgCG--ACGgaGUGGCCgACCG- -5'
13934 3' -59.2 NC_003521.1 + 12545 0.66 0.878786
Target:  5'- aGACGUGuuucaaCCUCACCGuGCUGGCc -3'
miRNA:   3'- -CUGCGUugcgacGGAGUGGC-CGACCG- -5'
13934 3' -59.2 NC_003521.1 + 53199 0.66 0.878786
Target:  5'- --aGCGGCGCgcgGCCcggcUCGCCcuGGCaGGCc -3'
miRNA:   3'- cugCGUUGCGa--CGG----AGUGG--CCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 64297 0.66 0.878786
Target:  5'- -cCGCAGCGC-GgCUCACagacgacGCUGGCc -3'
miRNA:   3'- cuGCGUUGCGaCgGAGUGgc-----CGACCG- -5'
13934 3' -59.2 NC_003521.1 + 233738 0.66 0.878786
Target:  5'- gGACGCcgccgccGCGuCUGCuucuuCUCACCGGg-GGCa -3'
miRNA:   3'- -CUGCGu------UGC-GACG-----GAGUGGCCgaCCG- -5'
13934 3' -59.2 NC_003521.1 + 150624 0.66 0.878786
Target:  5'- -uUGCGGCgGCUGCUgCGCaGGCgggGGCg -3'
miRNA:   3'- cuGCGUUG-CGACGGaGUGgCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 238487 0.66 0.878785
Target:  5'- cGACGCucGACGCcgUGCCgaCGCCcaGGCUcuuGGCc -3'
miRNA:   3'- -CUGCG--UUGCG--ACGGa-GUGG--CCGA---CCG- -5'
13934 3' -59.2 NC_003521.1 + 217261 0.66 0.878785
Target:  5'- cGACGUcucGugGCgggagGCCg-ACCuGCUGGCg -3'
miRNA:   3'- -CUGCG---UugCGa----CGGagUGGcCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 149160 0.66 0.877421
Target:  5'- --gGCGGCGCU-CCUCggcgucgGCCacggccgaggccaGGCUGGCg -3'
miRNA:   3'- cugCGUUGCGAcGGAG-------UGG-------------CCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 52302 0.66 0.876049
Target:  5'- --gGCGACGUgggGCC-CGCCGGCcuccucguaucucGGCg -3'
miRNA:   3'- cugCGUUGCGa--CGGaGUGGCCGa------------CCG- -5'
13934 3' -59.2 NC_003521.1 + 126083 0.66 0.874668
Target:  5'- cGACGCGcagacguuuacggccACGCacaaccccuggGCCUCGCaGGCcGGCu -3'
miRNA:   3'- -CUGCGU---------------UGCGa----------CGGAGUGgCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 122500 0.66 0.871884
Target:  5'- cGugGCGGCGCUcagucGCCggCACCcGcGCUcgcaGGCa -3'
miRNA:   3'- -CugCGUUGCGA-----CGGa-GUGG-C-CGA----CCG- -5'
13934 3' -59.2 NC_003521.1 + 162803 0.66 0.871884
Target:  5'- --gGCAAgGUcaUGCauCUCACCaagGGCUGGCu -3'
miRNA:   3'- cugCGUUgCG--ACG--GAGUGG---CCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 219802 0.66 0.871884
Target:  5'- aGCGCuuCGCgGUCUgGCUGcGCgUGGCg -3'
miRNA:   3'- cUGCGuuGCGaCGGAgUGGC-CG-ACCG- -5'
13934 3' -59.2 NC_003521.1 + 124179 0.66 0.871884
Target:  5'- aGCGCcugUGC-GCCU-GCCGGCUGGg -3'
miRNA:   3'- cUGCGuu-GCGaCGGAgUGGCCGACCg -5'
13934 3' -59.2 NC_003521.1 + 30233 0.66 0.871884
Target:  5'- uGGCGUcGCGCUGCaggucCGCgCGGUugccgUGGCg -3'
miRNA:   3'- -CUGCGuUGCGACGga---GUG-GCCG-----ACCG- -5'
13934 3' -59.2 NC_003521.1 + 75818 0.66 0.871884
Target:  5'- gGGCGCuGGCGUaGCCgcCGCCGGCgccGCu -3'
miRNA:   3'- -CUGCG-UUGCGaCGGa-GUGGCCGac-CG- -5'
13934 3' -59.2 NC_003521.1 + 26556 0.66 0.871884
Target:  5'- aGCGCGugGCccuggccugGCCUCgagACCGGUgccuggGGUg -3'
miRNA:   3'- cUGCGUugCGa--------CGGAG---UGGCCGa-----CCG- -5'
13934 3' -59.2 NC_003521.1 + 141840 0.66 0.871884
Target:  5'- -cUGCGACGC-GCCUa--CGGCUcccGGCa -3'
miRNA:   3'- cuGCGUUGCGaCGGAgugGCCGA---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.