Results 41 - 60 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 5' | -60.7 | NC_003521.1 | + | 167293 | 0.69 | 0.614509 |
Target: 5'- aCGGaCUgGCCGUCAUCGUCGCcgGCa--- -3' miRNA: 3'- -GCC-GA-CGGCAGUGGCAGCGa-CGacga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 166935 | 0.67 | 0.755082 |
Target: 5'- aCGGgaUGCUGUCGcagcucauccgcuacCCGUCGCUacggcaccagcaacaGCUGCUa -3' miRNA: 3'- -GCCg-ACGGCAGU---------------GGCAGCGA---------------CGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 166796 | 0.76 | 0.270837 |
Target: 5'- uCGGacgaUGCCGcCGCCGcUGCUGCUGCg -3' miRNA: 3'- -GCCg---ACGGCaGUGGCaGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 166753 | 0.68 | 0.682068 |
Target: 5'- gCGGC-GCCc-CGCUGgauggCGCUGCUGCg -3' miRNA: 3'- -GCCGaCGGcaGUGGCa----GCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 166623 | 0.7 | 0.556957 |
Target: 5'- -uGCUGCUGUCcCUGUagcaGCUGUUGCUg -3' miRNA: 3'- gcCGACGGCAGuGGCAg---CGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164818 | 0.69 | 0.624178 |
Target: 5'- uGGCgagagGaagaGUCGCUGcCGCUGCUGCg -3' miRNA: 3'- gCCGa----Cgg--CAGUGGCaGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164636 | 0.67 | 0.747802 |
Target: 5'- gGGUUaCCGUCGCUggagGUCGCUGUgGCg -3' miRNA: 3'- gCCGAcGGCAGUGG----CAGCGACGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164609 | 0.66 | 0.825428 |
Target: 5'- nCGGUaggaGCUGUCGCCGggaCGCgugGCgGCUg -3' miRNA: 3'- -GCCGa---CGGCAGUGGCa--GCGa--CGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164567 | 0.76 | 0.295943 |
Target: 5'- -uGCUGCUGUUGuuGUgGCUGCUGCUg -3' miRNA: 3'- gcCGACGGCAGUggCAgCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164487 | 0.73 | 0.405836 |
Target: 5'- -cGCaGCCGUCACCGUCGCcuccGCaGCUg -3' miRNA: 3'- gcCGaCGGCAGUGGCAGCGa---CGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164452 | 0.81 | 0.136983 |
Target: 5'- gCGGCcgcgGCCGUCACgGUCGCcGCUGCc -3' miRNA: 3'- -GCCGa---CGGCAGUGgCAGCGaCGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164024 | 0.7 | 0.604853 |
Target: 5'- -uGUUGCCGcCGCCGUgagcgcCGCUGUUGCc -3' miRNA: 3'- gcCGACGGCaGUGGCA------GCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 163457 | 0.69 | 0.653191 |
Target: 5'- -cGCUGCCGccgccacCACCGUgucCGCUGCcGCUg -3' miRNA: 3'- gcCGACGGCa------GUGGCA---GCGACGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 160776 | 0.67 | 0.738622 |
Target: 5'- aGGCUGCCGcccccuccUC-CCGcCGCgGuCUGCUg -3' miRNA: 3'- gCCGACGGC--------AGuGGCaGCGaC-GACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 160282 | 0.69 | 0.614509 |
Target: 5'- uGGUaGCCGUCGucgucguacucgUCGUCGCUGCcGCc -3' miRNA: 3'- gCCGaCGGCAGU------------GGCAGCGACGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 155852 | 0.71 | 0.491965 |
Target: 5'- -uGCUGCUGcUC-UCGUUGCUGCUGCa -3' miRNA: 3'- gcCGACGGC-AGuGGCAGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 153872 | 0.7 | 0.585599 |
Target: 5'- gGaGCUGCUGagCGCCaaccuggCGCUGCUGCUg -3' miRNA: 3'- gC-CGACGGCa-GUGGca-----GCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 153372 | 0.67 | 0.756892 |
Target: 5'- -uGCUGCCGUCGCgCG-CGCccgGCgGCg -3' miRNA: 3'- gcCGACGGCAGUG-GCaGCGa--CGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 151862 | 0.7 | 0.604853 |
Target: 5'- gGcGCUGCagaucaGUCGCCGggCGCUguGCUGCa -3' miRNA: 3'- gC-CGACGg-----CAGUGGCa-GCGA--CGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 151086 | 0.69 | 0.662841 |
Target: 5'- cCGGCUGCCGUCACCGcCcCcG-UGCc -3' miRNA: 3'- -GCCGACGGCAGUGGCaGcGaCgACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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