Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 5' | -60.7 | NC_003521.1 | + | 28587 | 0.71 | 0.51021 |
Target: 5'- cCGGCgguccgcagGCCG-CGCCGgggUCGCUGCcGCUg -3' miRNA: 3'- -GCCGa--------CGGCaGUGGC---AGCGACGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 202662 | 0.72 | 0.482956 |
Target: 5'- gCGGUUGCUgcaacuGUUGCaGUUGCUGCUGCUg -3' miRNA: 3'- -GCCGACGG------CAGUGgCAGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 239523 | 0.73 | 0.405835 |
Target: 5'- uCGGC-GCCacaccCGCCGUCGCUGCUGaCg -3' miRNA: 3'- -GCCGaCGGca---GUGGCAGCGACGAC-Ga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 210003 | 0.8 | 0.154667 |
Target: 5'- cCGGCUGCCGUgGCUGcCGCUGC-GCa -3' miRNA: 3'- -GCCGACGGCAgUGGCaGCGACGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 239714 | 0.7 | 0.576014 |
Target: 5'- gGGCcaccGCUGUCcCCGagcccgCGCUGCUGCg -3' miRNA: 3'- gCCGa---CGGCAGuGGCa-----GCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 133333 | 0.71 | 0.547496 |
Target: 5'- gCGGCUGCgaUgGCUGUgacUGCUGCUGCUg -3' miRNA: 3'- -GCCGACGgcAgUGGCA---GCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 103042 | 0.72 | 0.456423 |
Target: 5'- cCGGC-GCCGUCAUCGcgcagcCGCUGCcGCUc -3' miRNA: 3'- -GCCGaCGGCAGUGGCa-----GCGACGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 142940 | 0.81 | 0.147357 |
Target: 5'- -aGCUGCUGcCGCCGUCGCUGCUGaCg -3' miRNA: 3'- gcCGACGGCaGUGGCAGCGACGAC-Ga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 45888 | 0.71 | 0.538085 |
Target: 5'- gCGGCggugGCCGUCugCGUCgGC-GCUGa- -3' miRNA: 3'- -GCCGa---CGGCAGugGCAG-CGaCGACga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 74961 | 0.84 | 0.08338 |
Target: 5'- -cGCUGCCGcggcgcCGCCGUCGCUGCUGCUu -3' miRNA: 3'- gcCGACGGCa-----GUGGCAGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 31351 | 0.72 | 0.474027 |
Target: 5'- cCGGCcGCCGcCGUCGUCGCUGUUGg- -3' miRNA: 3'- -GCCGaCGGCaGUGGCAGCGACGACga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 58995 | 0.71 | 0.515739 |
Target: 5'- uGGCUGCUG-CACCGcCGCcuggagacgguggGCUGCg -3' miRNA: 3'- gCCGACGGCaGUGGCaGCGa------------CGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 203978 | 0.73 | 0.430694 |
Target: 5'- cCGGCUGCUGcUGCCGUCGCUaCUgGCg -3' miRNA: 3'- -GCCGACGGCaGUGGCAGCGAcGA-CGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 106070 | 0.73 | 0.414022 |
Target: 5'- uGGCUGCCGggCACCGUgGC--CUGCg -3' miRNA: 3'- gCCGACGGCa-GUGGCAgCGacGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 37783 | 0.76 | 0.28317 |
Target: 5'- aGGUUGCCGUUGCUGUCGCUGauCUGgUa -3' miRNA: 3'- gCCGACGGCAGUGGCAGCGAC--GACgA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 235210 | 0.79 | 0.187281 |
Target: 5'- aGGCUggaGCCGUCGUCGuccUCGCUGCUGCUa -3' miRNA: 3'- gCCGA---CGGCAGUGGC---AGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 63422 | 0.7 | 0.604853 |
Target: 5'- gGGCgGCgCGUCgAUCGUCagcccgcgcaGCUGCUGCUc -3' miRNA: 3'- gCCGaCG-GCAG-UGGCAG----------CGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 153872 | 0.7 | 0.585599 |
Target: 5'- gGaGCUGCUGagCGCCaaccuggCGCUGCUGCUg -3' miRNA: 3'- gC-CGACGGCa-GUGGca-----GCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 143809 | 0.7 | 0.566465 |
Target: 5'- gCGGCUGCugcuCGUCGCCGgcggCGC-GCgUGCg -3' miRNA: 3'- -GCCGACG----GCAGUGGCa---GCGaCG-ACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 67389 | 0.71 | 0.547496 |
Target: 5'- gCGGC--CCGcUGCUGUUGCUGCUGCUg -3' miRNA: 3'- -GCCGacGGCaGUGGCAGCGACGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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