miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 223661 0.66 0.822918
Target:  5'- --cGGGGcGCCacaCGGcccgCGUCGGGGCgCCg -3'
miRNA:   3'- auuUUCC-CGGg--GCCa---GCGGCCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 105187 0.66 0.822918
Target:  5'- ----uGGGCCCCc--CGCCgaucguGGGAUCCg -3'
miRNA:   3'- auuuuCCCGGGGccaGCGG------CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 45998 0.66 0.822918
Target:  5'- ---cAGGGUCUCGGccaguccgUCGCgGGGGUCCu -3'
miRNA:   3'- auuuUCCCGGGGCC--------AGCGgCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 233110 0.66 0.822918
Target:  5'- cGGGAGGGUCCgCGG-CGgCGGGGgagguaCCg -3'
miRNA:   3'- aUUUUCCCGGG-GCCaGCgGCCCUg-----GG- -5'
13936 3' -61.2 NC_003521.1 + 146170 0.66 0.822918
Target:  5'- cGAGGuGGGCCgCGaGUUGCUGGccggcggacGGCCCu -3'
miRNA:   3'- aUUUU-CCCGGgGC-CAGCGGCC---------CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 148770 0.66 0.814863
Target:  5'- ---uGGGuGCCCuCGGcggucgCGCCGaGGAgCCg -3'
miRNA:   3'- auuuUCC-CGGG-GCCa-----GCGGC-CCUgGG- -5'
13936 3' -61.2 NC_003521.1 + 191492 0.66 0.814863
Target:  5'- aGGAAGGcGUCaCCGG-CGCUgGGGACgCg -3'
miRNA:   3'- aUUUUCC-CGG-GGCCaGCGG-CCCUGgG- -5'
13936 3' -61.2 NC_003521.1 + 149930 0.66 0.814863
Target:  5'- ---cGGGGCCCaCGa-UGUCGGGcaGCCCg -3'
miRNA:   3'- auuuUCCCGGG-GCcaGCGGCCC--UGGG- -5'
13936 3' -61.2 NC_003521.1 + 167013 0.66 0.814863
Target:  5'- gUAGAAGG--UCCGGUUGCCGGcGACg- -3'
miRNA:   3'- -AUUUUCCcgGGGCCAGCGGCC-CUGgg -5'
13936 3' -61.2 NC_003521.1 + 107178 0.66 0.814863
Target:  5'- aGAAGGauguGGCUCCGGUUGaccuCGGGugCUu -3'
miRNA:   3'- aUUUUC----CCGGGGCCAGCg---GCCCugGG- -5'
13936 3' -61.2 NC_003521.1 + 92105 0.66 0.814863
Target:  5'- ----cGGuGCCCCgGGUCGgaacccCCGGGugCg -3'
miRNA:   3'- auuuuCC-CGGGG-CCAGC------GGCCCugGg -5'
13936 3' -61.2 NC_003521.1 + 100916 0.66 0.814863
Target:  5'- ----uGGGCUCCGcucgCGUCGGGAuuUCCg -3'
miRNA:   3'- auuuuCCCGGGGCca--GCGGCCCU--GGG- -5'
13936 3' -61.2 NC_003521.1 + 46799 0.66 0.81405
Target:  5'- ----cGaGGCCCUGGUgCGCCuGGagaagacGCCCg -3'
miRNA:   3'- auuuuC-CCGGGGCCA-GCGGcCC-------UGGG- -5'
13936 3' -61.2 NC_003521.1 + 27276 0.66 0.806664
Target:  5'- ----uGGaGCCUCGGUuucgaUGCCGuGGCCCg -3'
miRNA:   3'- auuuuCC-CGGGGCCA-----GCGGCcCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 133763 0.66 0.806664
Target:  5'- gGGuuGGGCCCCGcagcagcggCGCCaGGuGAUCCu -3'
miRNA:   3'- aUUuuCCCGGGGCca-------GCGG-CC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 93650 0.66 0.806664
Target:  5'- -uGGGGGGUCCgGGUUGCCaaaauuccccuGucccGGACCCc -3'
miRNA:   3'- auUUUCCCGGGgCCAGCGG-----------C----CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 168945 0.66 0.806664
Target:  5'- ---cAGGGCCgCCGcuGUCGCCGucGCUCc -3'
miRNA:   3'- auuuUCCCGG-GGC--CAGCGGCccUGGG- -5'
13936 3' -61.2 NC_003521.1 + 142250 0.66 0.805836
Target:  5'- ----cGGGCCCgcuccuccuCGGcCgacucgggcucggGCUGGGACCCg -3'
miRNA:   3'- auuuuCCCGGG---------GCCaG-------------CGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 215396 0.66 0.798326
Target:  5'- aGGAAGGGCaCCaggaaGGUgagGCUGGGcgaGCCCu -3'
miRNA:   3'- aUUUUCCCG-GGg----CCAg--CGGCCC---UGGG- -5'
13936 3' -61.2 NC_003521.1 + 39774 0.66 0.798326
Target:  5'- --cAGGGGCUcguaguccagguCCaGUCGCUgcuagcuuucguGGGACCCg -3'
miRNA:   3'- auuUUCCCGG------------GGcCAGCGG------------CCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.