miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 3' -59 NC_003521.1 + 62921 0.66 0.897599
Target:  5'- -gCCCUccCGcUCGcCCCGCUcguuCCGCCa -3'
miRNA:   3'- aaGGGAa-GC-AGCuGGGCGAu---GGCGGg -5'
13937 3' -59 NC_003521.1 + 29488 0.66 0.897599
Target:  5'- -cCCCaaccacUCG-CG-CCCGCgggACCGCCUg -3'
miRNA:   3'- aaGGGa-----AGCaGCuGGGCGa--UGGCGGG- -5'
13937 3' -59 NC_003521.1 + 128401 0.66 0.897599
Target:  5'- --gCCUUCGcCGAgC-GCggGCCGCCCu -3'
miRNA:   3'- aagGGAAGCaGCUgGgCGa-UGGCGGG- -5'
13937 3' -59 NC_003521.1 + 203478 0.66 0.891337
Target:  5'- gUCCCggCGgauacgugCGuccUCCGCgACCGCCCc -3'
miRNA:   3'- aAGGGaaGCa-------GCu--GGGCGaUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 99674 0.66 0.891337
Target:  5'- gUCCCUUCGaCGAgCagaCGCUGCUGgaCCu -3'
miRNA:   3'- aAGGGAAGCaGCU-Gg--GCGAUGGCg-GG- -5'
13937 3' -59 NC_003521.1 + 99972 0.66 0.891337
Target:  5'- --gCCUg---CGACCUGCagaagcgGCCGCCCg -3'
miRNA:   3'- aagGGAagcaGCUGGGCGa------UGGCGGG- -5'
13937 3' -59 NC_003521.1 + 129821 0.66 0.891337
Target:  5'- --gCCaUCGUCgGGCCCGCcgugccagcGCCGCCg -3'
miRNA:   3'- aagGGaAGCAG-CUGGGCGa--------UGGCGGg -5'
13937 3' -59 NC_003521.1 + 196468 0.66 0.891337
Target:  5'- cUCCgCUggcacUCGGCCCGUU-CCGCCUc -3'
miRNA:   3'- aAGG-GAagc--AGCUGGGCGAuGGCGGG- -5'
13937 3' -59 NC_003521.1 + 102198 0.66 0.891337
Target:  5'- --aCUUUCGcCGACCCGCUGuccuucuuCCuCCCu -3'
miRNA:   3'- aagGGAAGCaGCUGGGCGAU--------GGcGGG- -5'
13937 3' -59 NC_003521.1 + 70371 0.66 0.891337
Target:  5'- -gCCCUUCGgCGGCaCGCcgGCCagguGCCCu -3'
miRNA:   3'- aaGGGAAGCaGCUGgGCGa-UGG----CGGG- -5'
13937 3' -59 NC_003521.1 + 192580 0.66 0.891337
Target:  5'- -aCCCacggugcCGcCGACgCCGCUACCGCg- -3'
miRNA:   3'- aaGGGaa-----GCaGCUG-GGCGAUGGCGgg -5'
13937 3' -59 NC_003521.1 + 168633 0.66 0.884871
Target:  5'- aUCCUgccCGcCGACugCCGCUACgCGCCg -3'
miRNA:   3'- aAGGGaa-GCaGCUG--GGCGAUG-GCGGg -5'
13937 3' -59 NC_003521.1 + 55861 0.66 0.884871
Target:  5'- gUCCa--CGcUGGCCCGC-ACCGCCg -3'
miRNA:   3'- aAGGgaaGCaGCUGGGCGaUGGCGGg -5'
13937 3' -59 NC_003521.1 + 56038 0.66 0.884871
Target:  5'- gUUCaUCUUCGagcuguaccgcCGGCCgcgccuguCGCUGCCGCCCg -3'
miRNA:   3'- -AAG-GGAAGCa----------GCUGG--------GCGAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 151586 0.66 0.884871
Target:  5'- -gCCC-UCGgacgCcACCCGCcugGCCGCCUu -3'
miRNA:   3'- aaGGGaAGCa---GcUGGGCGa--UGGCGGG- -5'
13937 3' -59 NC_003521.1 + 68520 0.66 0.884871
Target:  5'- gUCCCgggGUCGGCggUCGC-ACCGCCa -3'
miRNA:   3'- aAGGGaagCAGCUG--GGCGaUGGCGGg -5'
13937 3' -59 NC_003521.1 + 127810 0.66 0.884871
Target:  5'- -aCCUggcCGaCGGCgUGCUGCCGCCg -3'
miRNA:   3'- aaGGGaa-GCaGCUGgGCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 163980 0.66 0.884871
Target:  5'- aUCCCgaCGcaggauUCGGCCuCGUgGCCGCCg -3'
miRNA:   3'- aAGGGaaGC------AGCUGG-GCGaUGGCGGg -5'
13937 3' -59 NC_003521.1 + 49971 0.66 0.880894
Target:  5'- aUCCCUUcCGUCGACggucucuuacuguguCuCGC-ACCGCgCCu -3'
miRNA:   3'- aAGGGAA-GCAGCUG---------------G-GCGaUGGCG-GG- -5'
13937 3' -59 NC_003521.1 + 128606 0.66 0.878203
Target:  5'- cUUCCC--CGUgGGCCUGUacCUGCCCg -3'
miRNA:   3'- -AAGGGaaGCAgCUGGGCGauGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.