miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 135619 0.65 0.691514
Target:  5'- cCGCCGCGGagacGGCgcgcGCGGgagggaggcaaccCGCCCgaCCc -3'
miRNA:   3'- -GCGGCGCCa---UCGa---CGCC-------------GCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 153496 0.65 0.691514
Target:  5'- uGCCGCGc-AGCUGCgccuccaGGCGCUCgCUgCg -3'
miRNA:   3'- gCGGCGCcaUCGACG-------CCGCGGG-GAgG- -5'
13938 5' -64.4 NC_003521.1 + 228130 0.65 0.689666
Target:  5'- aGCCGuCGGUccuggaguagaaccGGUcGCGGCGCaCCaaCCa -3'
miRNA:   3'- gCGGC-GCCA--------------UCGaCGCCGCG-GGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 44086 0.66 0.686892
Target:  5'- gGCCgGCGGcGGCUGaccCGGCugcugcgacauggcgGCCCC-CCu -3'
miRNA:   3'- gCGG-CGCCaUCGAC---GCCG---------------CGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 45740 0.66 0.684113
Target:  5'- uGCCGUGGUGGUgggccgggugaaggUGacgcccgaggacgaGGCGCCCgUaCCg -3'
miRNA:   3'- gCGGCGCCAUCG--------------ACg-------------CCGCGGGgA-GG- -5'
13938 5' -64.4 NC_003521.1 + 58318 0.66 0.684113
Target:  5'- uCGCCGUaucgGGUGGCcgccagcagcaacacGCGcGCGCCCUcgucgUCCu -3'
miRNA:   3'- -GCGGCG----CCAUCGa--------------CGC-CGCGGGG-----AGG- -5'
13938 5' -64.4 NC_003521.1 + 30713 0.66 0.683187
Target:  5'- gCGCCGCGGgcucaUGUcGCGUgaCCUCCg -3'
miRNA:   3'- -GCGGCGCCaucg-ACGcCGCGg-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 225850 0.66 0.683187
Target:  5'- gCGCuCGUGGUGGUgcggGCacaGGUGCCggugCUCCa -3'
miRNA:   3'- -GCG-GCGCCAUCGa---CG---CCGCGGg---GAGG- -5'
13938 5' -64.4 NC_003521.1 + 89010 0.66 0.683187
Target:  5'- uGCCGCGGgccccaccGGCgccacgGCGGUgaGUUCCUCg -3'
miRNA:   3'- gCGGCGCCa-------UCGa-----CGCCG--CGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 117376 0.66 0.683187
Target:  5'- gGCgGCGGcugAGCgGCGGaggcgGCCUCgUCCg -3'
miRNA:   3'- gCGgCGCCa--UCGaCGCCg----CGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 72949 0.66 0.683187
Target:  5'- gCGCCGUGGguggacggGGCggaauaGgGGCGCCgC-CCa -3'
miRNA:   3'- -GCGGCGCCa-------UCGa-----CgCCGCGGgGaGG- -5'
13938 5' -64.4 NC_003521.1 + 169219 0.66 0.683187
Target:  5'- aGCaGCGGgagcgacGGCgacaGCGGCGgCCCUgCCu -3'
miRNA:   3'- gCGgCGCCa------UCGa---CGCCGCgGGGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 112737 0.66 0.683187
Target:  5'- uGCCGaaguaGGUGGCcccGCcgGGCGCgCCCaCCa -3'
miRNA:   3'- gCGGCg----CCAUCGa--CG--CCGCG-GGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 233968 0.66 0.683187
Target:  5'- gGCCGCugaGGUGGagcugcaUGCGuuGUCCCUCg -3'
miRNA:   3'- gCGGCG---CCAUCg------ACGCcgCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 196975 0.66 0.683187
Target:  5'- uCGCCGcCGGUgaagucGGCcGUcGCuGCUCCUCCu -3'
miRNA:   3'- -GCGGC-GCCA------UCGaCGcCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 116873 0.66 0.683187
Target:  5'- gCGCgCGCaGUGGCgcggcugcgGCGGCGCgCCg-- -3'
miRNA:   3'- -GCG-GCGcCAUCGa--------CGCCGCGgGGagg -5'
13938 5' -64.4 NC_003521.1 + 145579 0.66 0.683187
Target:  5'- uGCUGCGGcGGCacgacGCGGCGgCCguggCCUCg -3'
miRNA:   3'- gCGGCGCCaUCGa----CGCCGC-GG----GGAGg -5'
13938 5' -64.4 NC_003521.1 + 153358 0.66 0.683187
Target:  5'- gCGCC-CGGcGGCgugGUGG-GCCCCggcCCg -3'
miRNA:   3'- -GCGGcGCCaUCGa--CGCCgCGGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 113199 0.66 0.680404
Target:  5'- gGUCGCGGUAgGCguaguaguugcccgUGaCGGgGCCCUcCCa -3'
miRNA:   3'- gCGGCGCCAU-CG--------------AC-GCCgCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 112000 0.66 0.680404
Target:  5'- uCGCCGUcuacgagccccaccGGgaaaacguuCUGCGGUGCCCCgaCCg -3'
miRNA:   3'- -GCGGCG--------------CCauc------GACGCCGCGGGGa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.