miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 31990 0.66 0.970587
Target:  5'- -aGGCGguggCCGCGGCGUCccAGCACgCGCa -3'
miRNA:   3'- gaCUGUg---GGUGCUGCAG--UCGUG-GUGa -5'
13941 5' -55.7 NC_003521.1 + 210275 0.66 0.970587
Target:  5'- uCUGugGCCgGCG-CGUCcGUACCGu- -3'
miRNA:   3'- -GACugUGGgUGCuGCAGuCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 36168 0.66 0.970587
Target:  5'- -gGACACCCcggACGGCGU--GC-CCACg -3'
miRNA:   3'- gaCUGUGGG---UGCUGCAguCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 180265 0.66 0.970587
Target:  5'- -cGACGaggaugCCACGACGgCGGC-CCGCg -3'
miRNA:   3'- gaCUGUg-----GGUGCUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 147313 0.66 0.970587
Target:  5'- gUGAUACCCaccACGACGcgcuaGGCGCC-CUc -3'
miRNA:   3'- gACUGUGGG---UGCUGCag---UCGUGGuGA- -5'
13941 5' -55.7 NC_003521.1 + 162613 0.66 0.970587
Target:  5'- -cGACAgCCucCGACG--AGCGCCGCg -3'
miRNA:   3'- gaCUGUgGGu-GCUGCagUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 100980 0.66 0.970587
Target:  5'- -cGGCGCgCACGGCGUUcuCGCuCGCUg -3'
miRNA:   3'- gaCUGUGgGUGCUGCAGucGUG-GUGA- -5'
13941 5' -55.7 NC_003521.1 + 227422 0.66 0.970306
Target:  5'- uCUGACACCCccacaACGACGcCcGCccggauuuuaaaaACCGCa -3'
miRNA:   3'- -GACUGUGGG-----UGCUGCaGuCG-------------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 221347 0.66 0.969738
Target:  5'- gUGGCGgUgACGGCGUCGGgcuuccacuucagcCACCGCUc -3'
miRNA:   3'- gACUGUgGgUGCUGCAGUC--------------GUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 113440 0.66 0.967687
Target:  5'- cCUGACGCCCugGuACG-C-GCGCgACc -3'
miRNA:   3'- -GACUGUGGGugC-UGCaGuCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 34861 0.66 0.967687
Target:  5'- -aGcCGCCCACcACGUagaAGCACUGCg -3'
miRNA:   3'- gaCuGUGGGUGcUGCAg--UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 221075 0.66 0.967687
Target:  5'- gCUGAaguggaaGCCCgACGcCGUCAcCGCCACg -3'
miRNA:   3'- -GACUg------UGGG-UGCuGCAGUcGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 130625 0.66 0.967687
Target:  5'- gCUGAgCGCgCACGGCGcCuGCgGCCGCa -3'
miRNA:   3'- -GACU-GUGgGUGCUGCaGuCG-UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 140104 0.66 0.967687
Target:  5'- uCUGguaGCGCUUGCGACa-CAGCGCCGCc -3'
miRNA:   3'- -GAC---UGUGGGUGCUGcaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 76713 0.66 0.967687
Target:  5'- gUGGCACCgGCGGCGgCAGUAaagACUa -3'
miRNA:   3'- gACUGUGGgUGCUGCaGUCGUgg-UGA- -5'
13941 5' -55.7 NC_003521.1 + 145864 0.66 0.967687
Target:  5'- -gGGC-CCgGCGGCGggCGGCGCCGa- -3'
miRNA:   3'- gaCUGuGGgUGCUGCa-GUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 142838 0.66 0.967687
Target:  5'- -gGGCGgCCACGGCG--GGCACgGCg -3'
miRNA:   3'- gaCUGUgGGUGCUGCagUCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 115403 0.66 0.967687
Target:  5'- -gGGCGgCCGCcACGgccuccggacUCAGCGCCGCg -3'
miRNA:   3'- gaCUGUgGGUGcUGC----------AGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 30996 0.66 0.967687
Target:  5'- -cGAC-CCCACGAgGUCGGaggUCACg -3'
miRNA:   3'- gaCUGuGGGUGCUgCAGUCgu-GGUGa -5'
13941 5' -55.7 NC_003521.1 + 73672 0.66 0.967687
Target:  5'- -aGACGCCCGaGGCGcccaaGGCGCUGCUc -3'
miRNA:   3'- gaCUGUGGGUgCUGCag---UCGUGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.